Browse Element(s) Details


Os.2320.1.S1_at

Description gb:AF141878.1
DB_XREF= gi:5499729
GEN=RGLP1
TID=Os.2320.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2320 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 1 precursor (RGLP1) mRNA, complete cds.
PROD=germin-like protein 1 precursor
FL= gb:AF141878.1 gb:AK058764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0908011/11Germin-like protein subfamily 1 member 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed
LOC_Os08g09110OsAffx.16909.1.S1_at11/118+5268520..5272950NB-ARC domain containing protein, expressed
LOC_Os08g09120OsAffx.29112.1.S1_at10/118+5273930..5274450hypothetical protein
LOC_Os08g09130OsAffx.29113.1.S1_at10/118+5277633..5279258hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2320.1.S1_at--437--5091Chr08:5258420..5258444 (25 bp)
GCACGTATTGACTATGCACCGTTAG
LOC_Os08g09080
Os.2320.1.S1_at--337--8991Chr08:5258497..5258521 (25 bp)
TGAAGGAACACTCTATGTCGGCTTC
LOC_Os08g09080
Os.2320.1.S1_at--663--7751Chr08:5258570..5258594 (25 bp)
GGTGATGTGTTCGTATTCCCTGTGG
LOC_Os08g09080
Os.2320.1.S1_at--1070--7211Chr08:5258704..5258728 (25 bp)
GTCGAAGCCACCAATCTCCGATGAT
LOC_Os08g09080
Os.2320.1.S1_at--153--3811Chr08:5258719..5258743 (25 bp)
CTCCGATGATGTTTTGGCCAAGGCA
LOC_Os08g09080
Os.2320.1.S1_at--256--8451Chr08:5258734..5258758 (25 bp)
GGCCAAGGCATTCCAGGTCGAAAAG
LOC_Os08g09080
Os.2320.1.S1_at--167--3091Chr08:5258764..5258788 (25 bp)
AATAGATTGGCTCCAAGCCCAGTTC
LOC_Os08g09080
Os.2320.1.S1_at--278--7651Chr08:5258790..5258814 (25 bp)
GGGAGAACAACCATTACTGATCATC
LOC_Os08g09080
Os.2320.1.S1_at--284--8931Chr08:5258892..5258916 (25 bp)
TGACTTCTATTTCGTGTACCACTAC
LOC_Os08g09080
Os.2320.1.S1_at--1071--7431Chr08:5258905..5258929 (25 bp)
GTGTACCACTACTAGCTATATTCTG
LOC_Os08g09080
Os.2320.1.S1_at--802--2111Chr08:5258945..5258969 (25 bp)
ACATGTGTATGGTTTTCCTGTTTAA
LOC_Os08g09080
Target Sequence 
GCACGTATTGACTATGCACCGTTAGGTCAAAACCCTCCCCACACTCATCCTCGTGCCACCGAAATCCTCACGGTGCTTGA
AGGAACACTCTATGTCGGCTTCGTCACGTCTAACCCAGATAACAAGTTTTTCTCCAAAGTGCTCAATAAGGGTGATGTGT
TCGTATTCCCTGTGGGGCTCATCCACTTCCAATTTAACCCTAACCCCTACAAGCCCGCGGTCGCAATTGCCGCACTTAGC
AGCCAGAACCCTGGTGCCATCACCATTGCAAATGCGGTGTTTGGGTCGAAGCCACCAATCTCCGATGATGTTTTGGCCAA
GGCATTCCAGGTCGAAAAGGGGACAATAGATTGGCTCCAAGCCCAGTTCTGGGAGAACAACCATTACTGATCATCTTACT
GATTGCATTTAAGAAAAAGTTATGTGCAGTTACAGAGATCCTGCATAATTAACTTTATATACTACAATAAAATGACTTCT
ATTTCGTGTACCACTACTAGCTATATTCTGTGATGTAATTCCAATACATGTGTATGGTTTTCCTGTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis