Browse Element(s) Details


OsAffx.26996.1.S1_at

Description tigr:9633.m02157
TID=OsAffx.26996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2418011/11hypothetical protein
LOC_Os08g090502/11hypothetical protein
LOC_Os12g171002/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24160Os.3740.3.S1_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.3.S1_x_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.3740.3.S1_s_at10/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.51834.1.S1_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.1.S1_x_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.2.S1_x_at4/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_x_at2/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_at1/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24170Os.46012.2.S1_x_at8/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.46012.3.S1_x_at6/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.27088.1.A1_x_at4/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.54691.1.S1_x_at1/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24180OsAffx.26996.1.S1_x_at11/115+13886201..13886584hypothetical protein
LOC_Os05g24180OsAffx.26996.1.S1_at11/115+13886201..13886584hypothetical protein
LOC_Os05g24190OsAffx.19542.3.S1_x_at4/115+13891540..13895431retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26996.1.S1_at--32--4714Chr11:8535614..8535638 (25 bp)
ATCTCCACCGTTGAGGCCAGGGTTT
NONE
OsAffx.26996.1.S1_at--760--94911Chr11:8535615..8535639 (25 bp)
TCTCCACCGTTGAGGCCAGGGTTTG
NONE
OsAffx.26996.1.S1_at--606--6415Chr10:7038652..7038672 (21 bp)
GATCTTCTCCTGATGACGGTTGGAG
NONE
OsAffx.26996.1.S1_at--308--9576Chr12:10149916..10149935 (20 bp)
TCTTCTCCTGATGACGGTTGGAGGG
NONE
OsAffx.26996.1.S1_at--663--98912Chr12:12117261..12117281 (21 bp)
TACTTCGGACAATTCCCCTTCCGCA
NONE
OsAffx.26996.1.S1_at--1143--9933Chr05:13886417..13886441 (25 bp)
TACCTACCTCTATATAAGAAGCTCC
LOC_Os05g24180
OsAffx.26996.1.S1_at--459--4291Chr05:13886423..13886447 (25 bp)
CCTCTATATAAGAAGCTCCTCTCCT
LOC_Os05g24180
OsAffx.26996.1.S1_at--281--9551Chr05:13886425..13886449 (25 bp)
TCTATATAAGAAGCTCCTCTCCTCA
LOC_Os05g24180
OsAffx.26996.1.S1_at--693--10171Chr05:13886427..13886451 (25 bp)
TATATAAGAAGCTCCTCTCCTCACT
LOC_Os05g24180
OsAffx.26996.1.S1_at--163--251Chr05:13886428..13886452 (25 bp)
ATATAAGAAGCTCCTCTCCTCACTT
LOC_Os05g24180
OsAffx.26996.1.S1_at--580--351Chr05:13886430..13886454 (25 bp)
ATAAGAAGCTCCTCTCCTCACTTCA
LOC_Os05g24180
Target Sequence 
ATCTCCACCGTTGAGGCCAGGGTTTGGCAGGGACGCTCCAGATCTTCTCCTGATGACGGTTGGAGGGTACTTCGGACAAT
TCCCCTTCCGCAACCGTCATACCTACCTCTATATAAGAAGCTCCTCTCCTCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis