Browse Element(s) Details


Os.51834.1.S1_at

Description gb:AK063972.1
DB_XREF= gi:32973990
TID=Os.51834.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B06, full insert sequence.
FL= gb:AK063972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0191611/11Double-stranded RNA binding motif family protein, expressed
LOC_Os05g241605/11Double-stranded RNA binding motif family protein, expressed
LOC_Os11g018694/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01870Os.47463.1.S1_x_at6/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.14491.2.S1_x_at5/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880Os.55160.1.S1_at11/1112+514426..516055expressed protein
LOC_Os12g01890OsAffx.31545.2.S1_x_at11/1112+520227..521682hypothetical protein
LOC_Os12g01890OsAffx.31545.2.S1_at11/1112+520227..521682hypothetical protein
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910OsAffx.18630.1.S1_at8/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01910OsAffx.31542.1.S1_x_at7/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01916Os.51834.1.S1_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916Os.3740.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.2.S1_x_at7/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.3.S1_x_at5/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51834.1.S1_at--368--10211Chr12:536924..536948 (25 bp)
TATTGGGACCTGCTACTGTAGTAGA
LOC_Os12g01916
Os.51834.1.S1_at--943--3271Chr12:536863..536887 (25 bp)
CAAACTTTCACTACAGTTGTTGGTT
LOC_Os12g01916
Os.51834.1.S1_at--962--8233Chr12:536781..536805 (25 bp)
GGCAAACCATGGACTATAACTCCAG
LOC_Os12g01916
Os.51834.1.S1_at--190--5691Chr12:536770..536794 (25 bp)
GACTATAACTCCAGGAATACTCGGA
LOC_Os12g01916
Os.51834.1.S1_at--598--3091Chr12:536755..536779 (25 bp)
AATACTCGGAGCTTTCGGCTTTGTA
LOC_Os12g01916
Os.51834.1.S1_at--11--6952Chr12:536733..536757 (25 bp)
GTAGATCACTAGATTGTCGGCTAAA
LOC_Os12g01916
Os.51834.1.S1_at--560--7171Chr12:536718..536742 (25 bp)
GTCGGCTAAAGGTAGGACCCAGTGA
LOC_Os12g01916
Os.51834.1.S1_at--515--7852Chr12:536681..536705 (25 bp)
GGTATTTGTATAGATGGGCCAGGTA
LOC_Os12g01916
Os.51834.1.S1_at--581--7153Chr12:536642..536666 (25 bp)
GTCTTTATTGTTGTCTTCTGTCATG
LOC_Os12g01916
Os.51834.1.S1_at--934--6535Chr03:27005990..27006122 (24 bp)
GATTTATTTGTATTTTCTCAAGCTC
NONE
Os.51834.1.S1_at--305--9532Chr12:536603..536627 (25 bp)
TCTCAAGCTCACAACTCTACTAAGT
LOC_Os12g01916
Target Sequence 
TATTGGGACCTGCTACTGTAGTAGATGATTATTAGAAAGCATTGTAATGGTCTTTTTGTTTCAAACTTTCACTACAGTTG
TTGGTTTTGAATTTTCAAAAATCTGAAGAACGGTATAAGAATTATAAAAACAGAGACAGAAAAGGCAAACCATGGACTAT
AACTCCAGGAATACTCGGAGCTTTCGGCTTTGTAGATCACTAGATTGTCGGCTAAAGGTAGGACCCAGTGAGCAAGAAGG
GAGGGTATTTGTATAGATGGGCCAGGTAGGAGATTGCAGAAAGTCTTTATTGTTGTCTTCTGTCATGATTTATTTGTATT
TTCTCAAGCTCACAACTCTACTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis