Browse Element(s) Details


OsAffx.30773.2.S1_x_at

Description tigr:9639.m00089
TID=OsAffx.30773.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0186911/11Double-stranded RNA binding motif family protein, expressed
LOC_Os12g019167/11Double-stranded RNA binding motif family protein, expressed
LOC_Os05g241604/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01880OsAffx.6960.1.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_x_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_s_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_x_at10/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.1.S1_at2/1111+476028..483647hypothetical protein
LOC_Os11g01890Os.9846.1.S1_x_at11/1111+483798..486696expressed protein
LOC_Os11g01890Os.9846.2.S1_at10/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.1.S1_at2/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.2.S1_x_at1/1111+483798..486696expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30773.2.S1_x_at--112--1452Chr12:535748..535772 (25 bp)
AGAAGCTGAGCCACCTAGAGATATT
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--608--5973Chr12:535702..535726 (25 bp)
GAGAACCAACACAGTGACGCTGCAT
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--110--5813Chr12:535687..535711 (25 bp)
GACGCTGCATTGGTGCAACCTGATG
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--439--3433Chr12:535639..535658 (20 bp)
CAGAGATATTTCAGTGGTGCCACCT
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--452--953Chr12:535584..535608 (25 bp)
AGGAACCATCCATCGATGCTGCAAT
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--1109--952Chr12:535524..535548 (25 bp)
AGGAGCCATTCATCGATACTGCAAT
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--337--2872Chr12:535475..535499 (25 bp)
AAGTGTAGAACTTGGGCCAGCCAGA
LOC_Os12g01916
OsAffx.30773.2.S1_x_at--562--2351Chr11:456717..456741 (25 bp)
AAAGCAGGAGCCAGCTGGTGACACT
LOC_Os11g01869
OsAffx.30773.2.S1_x_at--70--2631Chr11:456682..456706 (25 bp)
AACCTGACGTGGACGCTAGGGTCGT
LOC_Os11g01869
OsAffx.30773.2.S1_x_at--260--6091Chr11:456650..456674 (25 bp)
GAGTCACCAAGAACGGAACCTAATG
LOC_Os11g01869
OsAffx.30773.2.S1_x_at--775--5471Chr11:456594..456618 (25 bp)
GAACTCTGCAGTGTGTAATTCTCCA
LOC_Os11g01869
Target Sequence 
AGAAGCTGAGCCACCTAGAGATATTGAAATGGTACAACCTGATAAGGAGAACCAACACAGTGACGCTGCATTGGTGCAAC
CTGATGATGAAGCTAGAGTAGAACAGGAGCCATCCAGAGATATTTCAGTGGTGCCACCTAATGAGGAAGCTATAAGTGTT
AAGCAGGAACCATCCATCGATGCTGCAATTCTGCAACCTAAAGAGGAAGCTTCAAGTGTAAAGCAGGAGCCATTCATCGA
TACTGCAATGCTGCAAGCTTGTAAGGAAGCTGGAAGTGTAGAACTTGGGCCAGCCAGAGATACTGTAATTTCTCAACTTA
ATGAGCAAGATAGGGGTGTAAAGCAGGAGCCAGCTGGTGACACTGCAGTGCCACAACCTGACGTGGACGCTAGGGTCGTA
AAGGAGGAGTCACCAAGAACGGAACCTAATGGGGAAGCTACGAACATGAAGGAGACACCAAAGAACTCTGCAGTGTGTAA
TTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30773.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis