Browse Element(s) Details


Os.51935.1.S1_at

Description gb:AK064326.1
DB_XREF= gi:32974344
TID=Os.51935.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F06, full insert sequence.
FL= gb:AK064326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g018309/11Staphylococcal nuclease homologue family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51935.1.S1_at--439--8051Chr11:443124..443148 (25 bp)
GGAGCTTAAGATGCCCTACGGGAAG
LOC_Os11g01830
Os.51935.1.S1_at--385--4291Chr11:443138..443162 (25 bp)
CCTACGGGAAGGAATCACGGACTGC
LOC_Os11g01830
Os.51935.1.S1_at--16--3351Chr11:443153..443177 (25 bp)
CACGGACTGCGTTGGTGAAACTAAT
LOC_Os11g01830
Os.51935.1.S1_at--917--7611Chr11:443182..443206 (25 bp)
GGGAAGAGCGTCAAAATTTATGTAT
LOC_Os11g01830
Os.51935.1.S1_at--602--10351Chr11:443198..443220 (23 bp)
TTTATGTATATGATCTGGACCAGAG
LOC_Os11g01830
Os.51935.1.S1_at--768--1811Chr11:443680..443704 (25 bp)
ACGCCATCCAGGTGTACTGAAGTTG
LOC_Os11g01830
Os.51935.1.S1_at--898--8671Chr11:443742..443766 (25 bp)
TGTCTAGTTGGGTAACGTTGCTGTT
LOC_Os11g01830
Os.51935.1.S1_at--833--6671Chr11:443758..443782 (25 bp)
GTTGCTGTTGAGTAGCTTGCTGACA
LOC_Os11g01830
Os.51935.1.S1_at--161--6091Chr11:443767..443791 (25 bp)
GAGTAGCTTGCTGACAATGAATGTG
LOC_Os11g01830
Os.51935.1.S1_at--895--10191Chr11:443846..443870 (25 bp)
TATATCCAGGACCAGGAGTCAGCTG
NONE
Os.51935.1.S1_at--597--1611Chr11:443866..443890 (25 bp)
AGCTGTGCCGTGTGAAGTAACCTGA
NONE
Target Sequence 
GGAGCTTAAGATGCCCTACGGGAAGGAATCACGGACTGCGTTGGTGAAACTAATTGGTGGGAAGAGCGTCAAAATTTATG
TATATGATCTGGACCAGAGTTTGCAAGATGGGAGAGAGAGGCAAGAGCTGCAAACCGAGGGCTTTGGGCGTCAGGGAATC
CTGAGAAACCATGGGATTGGAGAAGAGACCAACGCAACGCAAGACAGGACGCCATCCAGGTGTACTGAAGTTGAGTCTCC
AGCTCTCATTTGGCCACAAATGTGCATATATGTCTAGTTGGGTAACGTTGCTGTTGAGTAGCTTGCTGACAATGAATGTG
TCAGGAACCAAAAGCCAAAATGTATGTATGGTTTGTGTTGTACAAAAGAGATTATATATCCAGGACCAGGAGTCAGCTGT
GCCGTGTGAAGTAACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis