Browse Element(s) Details


OsAffx.5723.1.A1_x_at

Description gb:NM_189104.1
DB_XREF= gi:34905291
TID=OsAffx.5723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0577B11.17 (P0577B11.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g018202/11Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g018202/11Sodium/hydrogen exchanger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5723.1.A1_x_at--250--7231Chr08:3674970..3674994 (25 bp)
GTCCGACCACATCGTGAACGCGTTC
NONE
OsAffx.5723.1.A1_x_at--465--5452Chr01:33982836..33982855 (20 bp)
GAACGCGTTCCGCTGCTTCGAGCAG
NONE
OsAffx.5723.1.A1_x_at--203--7753Chr01:33982897..33982921 (25 bp)
GGTGTCGCTGTACAGCAGCATGCAC
NONE
OsAffx.5723.1.A1_x_at--1122--2133Chr01:33982908..33982932 (25 bp)
ACAGCAGCATGCACCACGACGTGTG
NONE
OsAffx.5723.1.A1_x_at--1024--5751Chr08:3674861..3674885 (25 bp)
GACGTGTGCCTCCTGATGGACAGCT
NONE
OsAffx.5723.1.A1_x_at--664--8871Chr08:3674848..3674872 (25 bp)
TGATGGACAGCTGCAAGGCCAACCT
NONE
OsAffx.5723.1.A1_x_at--562--3253Chr12:491610..491633 (24 bp)
CAACCGGTCGGTGATGCAGTACGCA
LOC_Os12g01820
OsAffx.5723.1.A1_x_at--150--9951Chr08:3674742..3674766 (25 bp)
TACGCACTGTGCTCGGTGGGCATCC
NONE
OsAffx.5723.1.A1_x_at--923--7735Chr12:491643..491666 (24 bp)
GGTGGGCATCCTGATCGACCACGGC
LOC_Os12g01820
OsAffx.5723.1.A1_x_at--562--6613Chr01:33983146..33983170 (25 bp)
GTTGTACTTCTTGGGCGGCGCCGAT
NONE
OsAffx.5723.1.A1_x_at--351--6313Chr01:33983168..33983196 (25 bp)
GATGACCGGGAGACAGCCGCCCGTC
NONE
Target Sequence 
GTCCGACCACATCGTGAACGCGTTCCGCTGCTTCGAGCAGCAGGCGCCGCTGGGCGCGGTGACGGTGAGCCCGTACGTGG
TGGTGTCGCTGTACAGCAGCATGCACCACGACGTGTGCCTCCTGATGGACAGCTGCAAGGCCAACCTCATCCCGCTCCCC
TTCCACAGGACGGCGCCCGGAGCACGGCCAACAACGCCATCCGCGCCATCAACCGGTCGGTGATGCAGTACGCACTGTGC
TCGGTGGGCATCCTGATCGACCACGGCCTGGCGGCGGGGTCGGCGTGCGCGACGGCGTCGAACAGCACGCTGCAGCGGGT
GGCGTTGTACTTCTTGGGCGGCGCCGATGACCGGGAGACAGCCGCCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5723.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis