Browse Element(s) Details

OsAffx.30771.2.S1_at

Description

tigr:9640.m00081
TID=OsAffx.30771.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g01800	11/11	DNA cytosine methyltransferase Zmet3, putative
LOC_Os11g01810	7/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g01760	Os.46305.1.S1_at	11/11	12	+	463699..467349	Leucine Rich Repeat family protein, expressed
LOC_Os12g01770	OsAffx.19448.1.S1_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.6814.2.S1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_at	4/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.49767.1.S1_x_at	1/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01780	OsAffx.442.1.S1_x_at	7/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_x_at	6/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_s_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_x_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.24587.1.S1_x_at	3/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.4.S1_x_at	2/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.19052.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.442.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790	NA	NA	12	+	477528..481911	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800	OsAffx.30771.2.S1_at	11/11	12	+	482987..485738	DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810	NA	NA	12	+	487872..488606	hypothetical protein
LOC_Os12g01820	Os.53829.1.S1_at	3/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01820	OsAffx.5723.1.A1_x_at	2/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01840	OsAffx.31544.1.S1_at	11/11	12	+	493758..494114	hypothetical protein
LOC_Os12g01830	Os.16506.1.A1_at	11/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01830	Os.51492.1.S1_at	1/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01850	Os.54332.1.S1_at	11/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.31545.1.S1_x_at	6/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.19826.2.S1_at	1/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01860	NA	NA	12	+	503097..506429	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.47463.1.S1_x_at	6/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.14491.2.S1_x_at	5/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006306	biological_process	DNA methylation
GO:0006346	biological_process	methylation-dependent chromatin silencing
GO:0005634	cellular_component	nucleus
GO:0003886	molecular_function	DNA (cytosine-5-)-methyltransferase activity
GO:0008168	molecular_function	methyltransferase activity
GO:0008170	molecular_function	N-methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.30771.2.S1_at--300--947	2	Chr12:485382..485406 (25 bp)	TCTGAAGCCTTTCCTTCTACTAAGA	LOC_Os12g01800
OsAffx.30771.2.S1_at--898--1057	1	Chr12:485396..485420 (25 bp)	TTCTACTAAGATGTGGTGGCCCTCT	LOC_Os12g01800
OsAffx.30771.2.S1_at--670--749	1	Chr12:485408..485432 (25 bp)	GTGGTGGCCCTCTTGGGATCCAAGA	LOC_Os12g01800
OsAffx.30771.2.S1_at--354--823	2	Chr12:485462..485486 (25 bp)	GGCAAGCGCAAAGCATACAGAACGG	LOC_Os12g01800
OsAffx.30771.2.S1_at--1032--545	2	Chr12:485481..485505 (25 bp)	GAACGGATACGATGTGCTCTTGGTA	LOC_Os12g01800
OsAffx.30771.2.S1_at--1028--375	1	Chr12:485497..485521 (25 bp)	CTCTTGGTAGATTCGGTGATGCACT	LOC_Os12g01800
OsAffx.30771.2.S1_at--1110--175	2	Chr12:485522..485546 (25 bp)	ACCTCCAGCAGTTCAGAAGAGTGTC	LOC_Os12g01800
OsAffx.30771.2.S1_at--1156--517	2	Chr12:485553..485577 (25 bp)	GAATGTAGGAAGTGGAACCTTGTCT	LOC_Os12g01800
OsAffx.30771.2.S1_at--372--321	2	Chr12:485591..485615 (25 bp)	CAAGGTTGCTACTCTAGAGCCTGAT	LOC_Os12g01800
OsAffx.30771.2.S1_at--458--623	2	Chr12:485618..485642 (25 bp)	GATGGAATTCCTATTGGGATACCCT	LOC_Os12g01800
OsAffx.30771.2.S1_at--1065--765	1	Chr12:485633..485657 (25 bp)	GGGATACCCTAGGAATCATACCAGG	LOC_Os12g01800

Target Sequence

TCTGAAGCCTTTCCTTCTACTAAGATGTGGTGGCCCTCTTGGGATCCAAGAAGGCAGTTCAACTGCTTGCAAACTTATGT
GGCAAGCGCAAAGCATACAGAACGGATACGATGTGCTCTTGGTAGATTCGGTGATGCACTACCTCCAGCAGTTCAGAAGA
GTGTCTTGGAAGAATGTAGGAAGTGGAACCTTGTCTGGGTTGGAAAGAACAAGGTTGCTACTCTAGAGCCTGATGAGATG
GAATTCCTATTGGGATACCCTAGGAATCATACCAGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis