Browse Element(s) Details

Os.16506.1.A1_at

Description

gb:AK103380.1
DB_XREF= gi:32988589
TID=Os.16506.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127E15, full insert sequence.
FL= gb:AK103380.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g01830	11/11	nuclease, putative, expressed
LOC_Os11g01830	3/11	Staphylococcal nuclease homologue family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g01770	OsAffx.19448.1.S1_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.6814.2.S1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_at	4/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.49767.1.S1_x_at	1/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01780	OsAffx.442.1.S1_x_at	7/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_x_at	6/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_s_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_x_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.24587.1.S1_x_at	3/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.4.S1_x_at	2/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.19052.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.442.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790	NA	NA	12	+	477528..481911	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800	OsAffx.30771.2.S1_at	11/11	12	+	482987..485738	DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810	NA	NA	12	+	487872..488606	hypothetical protein
LOC_Os12g01820	Os.53829.1.S1_at	3/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01820	OsAffx.5723.1.A1_x_at	2/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01840	OsAffx.31544.1.S1_at	11/11	12	+	493758..494114	hypothetical protein
LOC_Os12g01830	Os.16506.1.A1_at	11/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01830	Os.51492.1.S1_at	1/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01850	Os.54332.1.S1_at	11/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.31545.1.S1_x_at	6/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.19826.2.S1_at	1/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01860	NA	NA	12	+	503097..506429	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.47463.1.S1_x_at	6/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.14491.2.S1_x_at	5/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880	Os.55160.1.S1_at	11/11	12	+	514426..516055	expressed protein
LOC_Os12g01890	OsAffx.31545.2.S1_x_at	11/11	12	+	520227..521682	hypothetical protein
LOC_Os12g01890	OsAffx.31545.2.S1_at	11/11	12	+	520227..521682	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0004518	molecular_function	nuclease activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.16506.1.A1_at--880--883	2	Chr12:497222..497246 (25 bp)	TGATCTGGACCAGTTTGGGCGCTAC	LOC_Os12g01830
Os.16506.1.A1_at--137--509	2	Chr12:497418..497442 (25 bp)	GCACTTCAAGACTTATGATAAACGC	LOC_Os12g01830
Os.16506.1.A1_at--425--569	2	Chr12:497427..497451 (25 bp)	GACTTATGATAAACGCCCAGAGTTT	LOC_Os12g01830
Os.16506.1.A1_at--548--27	1	Chr12:498132..498156 (25 bp)	ATATGTGTAATTGGGTAACGTTGTT	LOC_Os12g01830
Os.16506.1.A1_at--487--259	1	Chr12:498148..498172 (25 bp)	AACGTTGTTGTTGAGTAGCTTTGCT	LOC_Os12g01830
Os.16506.1.A1_at--170--665	1	Chr12:498151..498175 (25 bp)	GTTGTTGTTGAGTAGCTTTGCTTGC	LOC_Os12g01830
Os.16506.1.A1_at--277--665	1	Chr12:498154..498178 (25 bp)	GTTGTTGAGTAGCTTTGCTTGCAAT	LOC_Os12g01830
Os.16506.1.A1_at--1123--1071	1	Chr12:498168..498192 (25 bp)	TTGCTTGCAATGAATGTGTCAGAAA	LOC_Os12g01830
Os.16506.1.A1_at--481--901	1	Chr12:498173..498197 (25 bp)	TGCAATGAATGTGTCAGAAACCAAA	LOC_Os12g01830
Os.16506.1.A1_at--15--1011	1	Chr12:498208..498232 (25 bp)	TATGTGTGGTTTATGTTGTACGAAA	LOC_Os12g01830
Os.16506.1.A1_at--727--161	1	Chr12:498254..498278 (25 bp)	AGCTGTGCCGTGTGATGTGGAGGTG	LOC_Os12g01830

Target Sequence

TGATCTGGACCAGTTTGGGCGCTACNTTGGTGATATCTATTNCAATAATTTGTTCATTCAGGAGCAAATGNTGAAGAATG
GCCATGCATGGCACTTCAAGACTTATGATAAACGCCCAGAGTTTGCAAGATGGGAGAGAGAGGCAAAAGCTGCAAACCGA
GGGCTTTGGGCGTCAGGGAATCCTGAGAAACCATGGGATTGGAGAAGAGACCAACGCAACGCAAGACAGGACGCCATTNC
AGGTGTACTGAAAGTTGAGTCTCCAGCACTCATTTGGCCACAAATGTGCATATATGTGTAATTGGGTAACGTTGTTGTTG
AGTAGCTTTGCTTGCAATGAATGTGTCAGAAACCAAAAGCCAAAATGTATGTGTGGTTTATGTTGTACGAAAGAGATTAT
ATATCCAGGAGTCAGCTGTGCCGTGTGATGTGGAGGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis