Browse Element(s) Details

Os.55160.1.S1_at

Description

gb:AK107606.1
DB_XREF= gi:32992815
TID=Os.55160.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-B11, full insert sequence.
FL= gb:AK107606.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g01880	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g01820	Os.53829.1.S1_at	3/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01820	OsAffx.5723.1.A1_x_at	2/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01840	OsAffx.31544.1.S1_at	11/11	12	+	493758..494114	hypothetical protein
LOC_Os12g01830	Os.16506.1.A1_at	11/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01830	Os.51492.1.S1_at	1/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01850	Os.54332.1.S1_at	11/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.31545.1.S1_x_at	6/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.19826.2.S1_at	1/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01860	NA	NA	12	+	503097..506429	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.47463.1.S1_x_at	6/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.14491.2.S1_x_at	5/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880	Os.55160.1.S1_at	11/11	12	+	514426..516055	expressed protein
LOC_Os12g01890	OsAffx.31545.2.S1_x_at	11/11	12	+	520227..521682	hypothetical protein
LOC_Os12g01890	OsAffx.31545.2.S1_at	11/11	12	+	520227..521682	hypothetical protein
LOC_Os12g01900	Os.50793.1.S1_x_at	10/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	Os.50793.1.S1_at	7/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	Os.27583.1.S1_at	2/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	OsAffx.31930.1.S1_at	1/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	OsAffx.31930.1.S1_x_at	1/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910	OsAffx.18630.1.S1_at	8/11	12	+	530180..534127	pentatricopeptide, putative
LOC_Os12g01910	OsAffx.31542.1.S1_x_at	7/11	12	+	530180..534127	pentatricopeptide, putative
LOC_Os12g01916	Os.51834.1.S1_at	11/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	Os.3740.1.S1_x_at	11/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	OsAffx.30773.1.S1_x_at	11/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	OsAffx.30773.2.S1_x_at	7/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	OsAffx.30773.3.S1_x_at	5/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922	Os.3740.3.S1_s_at	10/11	12	+	540268..549495	transducin family protein, putative, expressed
LOC_Os12g01922	Os.3740.4.S1_at	6/11	12	+	540268..549495	transducin family protein, putative, expressed
LOC_Os12g01922	Os.3740.3.S1_at	2/11	12	+	540268..549495	transducin family protein, putative, expressed
LOC_Os12g01922	OsAffx.30773.3.S1_x_at	2/11	12	+	540268..549495	transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55160.1.S1_at--450--527	1	Chr12:515458..515482 (25 bp)	GAATGCGGCACTCATGCCTTCAACA	LOC_Os12g01880
Os.55160.1.S1_at--403--137	1	Chr12:515536..515560 (25 bp)	AGAGCTCAGTATGTGCCCGACCTCA	LOC_Os12g01880
Os.55160.1.S1_at--725--221	1	Chr12:515594..515618 (25 bp)	ACAACCTCTGTGCTATTGATCTCTC	LOC_Os12g01880
Os.55160.1.S1_at--1105--847	1	Chr12:515656..515680 (25 bp)	TGGCTTGACCTCGACATACCTAAAT	LOC_Os12g01880
Os.55160.1.S1_at--435--1041	1	Chr12:515728..515752 (25 bp)	TTTTGTGCTGCCAAGATCTTTCGTT	LOC_Os12g01880
Os.55160.1.S1_at--218--281	1	Chr12:515740..515764 (25 bp)	AAGATCTTTCGTTCCAATATGCCTG	LOC_Os12g01880
Os.55160.1.S1_at--862--911	1	Chr12:515769..515793 (25 bp)	TGCTGCTTTCCTAGATGATTCCGAT	LOC_Os12g01880
Os.55160.1.S1_at--1069--577	1	Chr12:515800..515824 (25 bp)	GACGACTATACTGTTGACTCTCATG	LOC_Os12g01880
Os.55160.1.S1_at--112--55	1	Chr12:515827..515851 (25 bp)	ATCCCTACGGATTTTGCTGTCTTCA	LOC_Os12g01880
Os.55160.1.S1_at--851--845	1	Chr12:515853..515877 (25 bp)	TGGCCTGCATATGGTGCGCCGCAAT	LOC_Os12g01880
Os.55160.1.S1_at--658--525	1	Chr12:515966..515990 (25 bp)	GAATCTAACCTAGCATTGTTCCATA	LOC_Os12g01880

Target Sequence

GAATGCGGCACTCATGCCTTCAACACACTCACCGGTGAATGGCACCATGTTGGCTACTGGACGATGCCGTTTTATGGCAG
AGCTCAGTATGTGCCCGACCTCAATCTCTGGTTTGGACTCTCTGCCCGACACCCTTACAACCTCTGTGCTATTGATCTCT
CCAACGCCCATCTGCACCCACCCGATGTCCTGCAAACTTGGCTTGACCTCGACATACCTAAATCCTGGTCGCCCTCCAAG
CTCAACCTCATCAGCCTCGGCTCTGGCAGATTTTGTGCTGCCAAGATCTTTCGTTCCAATATGCCTGCTGCTGCTGCTTT
CCTAGATGATTCCGATGACGACGACGACTATACTGTTGACTCTCATGTCATCCCTACGGATTTTGCTGTCTTCACTGGCC
TGCATATGGTGCGCCGCAATGGTAAGGATGGTCAAGAGCAGATCCAAATGATCAAGCACAAGTCCATCTTCTACACCTTC
AACAGCTATAATATTGAATGGGTTATCTGAATCTAACCTAGCATTGTTCCATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis