Browse Element(s) Details


OsAffx.31930.1.S1_x_at

Description tigr:9640.m02855
TID=OsAffx.31930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2962011/11hypothetical protein
LOC_Os12g296501/11hypothetical protein
LOC_Os12g019001/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g340901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29590OsAffx.7737.1.S1_at10/1112+17649594..17650435hypothetical protein
LOC_Os12g29600NANA12+17652550..17653342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29610OsAffx.31929.1.S1_at10/1112+17655409..17659727hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_x_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31931.1.S1_x_at2/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.7292.1.S1_x_at1/1112+17662524..17664058hypothetical protein
LOC_Os12g29630OsAffx.23366.2.S1_s_at1/1112+17665149..17668715transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640Os.46314.3.S1_at2/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640OsAffx.7362.1.S1_x_at1/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29650OsAffx.31931.1.S1_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31931.1.S1_x_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31930.1.S1_x_at1/1112+17674737..17676629hypothetical protein
LOC_Os12g29660Os.27674.1.S1_at11/1112+17678736..17688870DEAD/DEAH box helicase family protein, expressed
LOC_Os12g29670Os.9359.1.S1_at11/1112+17689036..17692280expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31930.1.S1_x_at--287--8271Chr12:17663492..17663516 (25 bp)
GGCATCCGGTTCAGGCGTAGCCCGA
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--319--6091Chr12:17663591..17663615 (25 bp)
GAGTACGCGTTCCTCAACCTCATGG
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--131--10552Chr12:17663669..17663693 (25 bp)
TTCATGGACAGCATCATCGACTCGG
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--576--7711Chr12:17663724..17663748 (25 bp)
GGGTGATCCAGAACGCCGTCGGTAG
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--960--8472Chr12:17663760..17663784 (25 bp)
TGGCGAGGCTGTTCAACGGGCTCTC
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--984--10451Chr12:17663771..17663795 (25 bp)
TTCAACGGGCTCTCCAAGGACGTCG
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--903--8911Chr12:17663850..17663874 (25 bp)
TGAGCCGCTACTGCCGGAAGCCGTG
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--892--1671Chr12:17663868..17663892 (25 bp)
AGCCGTGCCACGTGTGGCGCGCCAA
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--46--2632Chr12:17663891..17663915 (25 bp)
AACCTGGTGCACACCTACTTCCGGA
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--137--691Chr12:17663963..17663987 (25 bp)
ATGACGGTGGCGCAGACCGTCTACA
LOC_Os12g29620
OsAffx.31930.1.S1_x_at--562--7251Chr12:17663990..17664014 (25 bp)
GTCCTGCCCTTCTACCAGCAGGGTG
LOC_Os12g29620
Target Sequence 
GGCATCCGGTTCAGGCGTAGCCCGACGGCGAGCCTCCACGACATCACCTTCCGCCGCGGCGTGCTCGCCCTGCCGTTCGT
CGTCGTCGACGACTCCACCGAGTACGCGTTCCTCAACCTCATGGCGTTCGAGCGCCTCCACGCCGGCGCCGGCAACGACG
TCACCGCCTACGTCCTCTTCATGGACAGCATCATCGACTCGGCCCGCGACGCGGCGCTGCTCACCGCGAGGGGGGTGATC
CAGAACGCCGTCGGTAGCGACAAGGCGGTGGCGAGGCTGTTCAACGGGCTCTCCAAGGACGTCGTCGCGCTGGACGGCGC
TGGCGGCGACGGCGAGCTCTACGCCGTGCGGCGCGCGGTGAGCCGCTACTGCCGGAAGCCGTGCCACGTGTGGCGCGCCA
ACCTGGTGCACACCTACTTCCGGAGCCCCTGGGCGTTCATGTCGCTCGCCGCCGCCGTCTTCCTCCTCGCCATGACGGTG
GCGCAGACCGTCTACACCGTCCTGCCCTTCTACCAGCAGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31930.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis