Browse Element(s) Details


Os.9359.1.S1_at

Description gb:AK102011.1
DB_XREF= gi:32987220
TID=Os.9359.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080C14, full insert sequence.
FL= gb:AK102011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2967011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29620OsAffx.31930.1.S1_x_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31931.1.S1_x_at2/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.7292.1.S1_x_at1/1112+17662524..17664058hypothetical protein
LOC_Os12g29630OsAffx.23366.2.S1_s_at1/1112+17665149..17668715transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640Os.46314.3.S1_at2/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640OsAffx.7362.1.S1_x_at1/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29650OsAffx.31931.1.S1_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31931.1.S1_x_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31930.1.S1_x_at1/1112+17674737..17676629hypothetical protein
LOC_Os12g29660Os.27674.1.S1_at11/1112+17678736..17688870DEAD/DEAH box helicase family protein, expressed
LOC_Os12g29670Os.9359.1.S1_at11/1112+17689036..17692280expressed protein
LOC_Os12g29680OsAffx.19886.1.S1_at10/1112+17695399..17700073hypothetical protein
LOC_Os12g29690OsAffx.31932.1.S1_at11/1112+17701955..17706469NB-ARC domain containing protein
LOC_Os12g29700OsAffx.24866.1.S1_at9/1112+17711461..17716647retrotransposon protein, putative, unclassified
LOC_Os12g29720OsAffx.19888.1.S1_at11/1112+17716855..17718664hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9359.1.S1_at--712--8551Chr12:17689150..17689171 (22 bp)
TGGAGGACTGCACCGTGTCCAATGC
LOC_Os12g29670
Os.9359.1.S1_at--476--1771Chr12:17691889..17691913 (25 bp)
ACCTGGTTCTTCTCAGTTGCTGGTG
LOC_Os12g29670
Os.9359.1.S1_at--1018--7311Chr12:17691911..17691935 (25 bp)
GTGCTCTTGTTGCTATTCCTGTGGG
LOC_Os12g29670
Os.9359.1.S1_at--558--5371Chr12:17691942..17691966 (25 bp)
GAAGAAATCCTTGGCACCACTGGTT
LOC_Os12g29670
Os.9359.1.S1_at--1019--1951Chr12:17691960..17691984 (25 bp)
ACTGGTTTTCTTTGGCACTACTGGA
LOC_Os12g29670
Os.9359.1.S1_at--1144--9972Chr12:17693628..17693652 (25 bp)
TAGCCAATGCGAGCGGGAGCATGCT
NONE
Os.9359.1.S1_at--254--3532Chr12:17693647..17693671 (25 bp)
CATGCTGAGCGGCAGATGAAGCTTT
NONE
Os.9359.1.S1_at--133--5412Chr12:17693674..17693698 (25 bp)
GAAGCTCAAAACCTTTCTGCCAATG
NONE
Os.9359.1.S1_at--41--3012Chr12:17693751..17693775 (25 bp)
AATGCAGCTGTTGTTTTTCGTAACT
NONE
Os.9359.1.S1_at--536--10872Chr12:17693793..17693817 (25 bp)
TTGGCATGATCTTCTGCTCTTGTAC
NONE
Os.9359.1.S1_at--1111--4812Chr12:17693808..17693832 (25 bp)
GCTCTTGTACAAATTTGTCCATCCA
NONE
Target Sequence 
TGGAGGACTGCACCGTGTCCAATGCTCTCGGCACCTGGTTCTTCTCAGTTGCTGGTGCTCTTGTTGCTATTCCTGTGGGG
ATAAAGAAGAAATCCTTGGCACCACTGGTTTTCTTTGGCACTACTGGAACTATGCTTGATATCATCATGGGCATTAGCCA
ATGCGAGCGGGAGCATGCTGAGCGGCAGATGAAGCTTTTAGAAGCTCAAAACCTTTCTGCCAATGCTTCAGCAGATGGTG
AAAACTGATCAAGTTCTTTGATTATTAGGACAAGCAAAATGCAGCTGTTGTTTTTCGTAACTTACTAGTTGATCTGTAAT
TGGCATGATCTTCTGCTCTTGTACAAATTTGTCCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis