Browse Element(s) Details


OsAffx.30773.3.S1_x_at

Description tigr:9633.m02154
TID=OsAffx.30773.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Double-stranded RNA binding motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2416011/11Double-stranded RNA binding motif family protein, expressed
LOC_Os12g019165/11Double-stranded RNA binding motif family protein, expressed
LOC_Os11g018694/11Double-stranded RNA binding motif family protein, expressed
LOC_Os12g019222/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24120Os.23706.1.A1_x_at1/115+13831965..13837549retrotransposon protein, putative, unclassified
LOC_Os05g24130OsAffx.14799.1.S1_at11/115+13841888..13842130hypothetical protein
LOC_Os05g24140OsAffx.14800.1.S1_at11/115+13847796..13850669expressed protein
LOC_Os05g24150OsAffx.26994.1.S1_at11/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24150OsAffx.11634.2.S1_x_at1/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24160Os.3740.3.S1_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.3.S1_x_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.3740.3.S1_s_at10/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.51834.1.S1_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.1.S1_x_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.2.S1_x_at4/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_x_at2/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_at1/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24170Os.46012.2.S1_x_at8/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.46012.3.S1_x_at6/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.27088.1.A1_x_at4/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.54691.1.S1_x_at1/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24180OsAffx.26996.1.S1_x_at11/115+13886201..13886584hypothetical protein
LOC_Os05g24180OsAffx.26996.1.S1_at11/115+13886201..13886584hypothetical protein
LOC_Os05g24190OsAffx.19542.3.S1_x_at4/115+13891540..13895431retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30773.3.S1_x_at--962--6572Chr12:535840..535864 (25 bp)
GATTCTGATGTCCTAATGCAGCCAA
LOC_Os12g01916
OsAffx.30773.3.S1_x_at--969--3471Chr05:13864505..13864529 (25 bp)
CAGGAGGCATCTTGTGGCACTTTGT
LOC_Os05g24160
OsAffx.30773.3.S1_x_at--606--5973Chr12:535702..535726 (25 bp)
GAGAACCAACACAGTGACGCTGCAT
LOC_Os12g01916
OsAffx.30773.3.S1_x_at--109--5813Chr12:535687..535711 (25 bp)
GACGCTGCATTGGTGCAACCTGATG
LOC_Os12g01916
OsAffx.30773.3.S1_x_at--457--8093Chr12:535643..535667 (25 bp)
GGAGCCATCCAGAGATATTTCAGTG
LOC_Os12g01916
OsAffx.30773.3.S1_x_at--450--953Chr12:535585..535608 (24 bp)
AGGAACCATCCATCGATGCTGCAAC
LOC_Os12g01916
OsAffx.30773.3.S1_x_at--244--2431Chr05:13862725..13862749 (25 bp)
AAAACTGGCTGTGTGGCACTTGTCT
LOC_Os05g24160
OsAffx.30773.3.S1_x_at--39--2093Chr12:547566..547590 (25 bp)
ACATTAGTGTTGATCCGCCGGATGT
LOC_Os12g01922
OsAffx.30773.3.S1_x_at--161--7391Chr05:13862668..13862692 (25 bp)
GTGATCAAAATCTCCCCTTGTGTAA
LOC_Os05g24160
OsAffx.30773.3.S1_x_at--757--851Chr05:13862029..13862053 (25 bp)
ATGGCAGCTCCAAAAGCCCTTGAAA
LOC_Os05g24160
OsAffx.30773.3.S1_x_at--267--5073Chr12:546766..546866 (25 bp)
GCAGCCAAAGGCTCGTTACAAGCTT
LOC_Os12g01922
Target Sequence 
GATTCTGATGTCCTAATGCAGCCAACGGTAATAACACAGGAGGCATCTTGTGGCACTTTGTTCCTGCAACCTTGTGAGGA
AGCTAAAAGAGTAGAAGATGAGCCACCTAGAGATATTGAAATGGTACAACCTGATAAGGAGAACCAACACAGTGACGCTG
CATTGGTGCAACCTGATGATGAAGCTAGAGTAGAACAGGAGCCATCCAGAGATATTTCAGTGGTGCAACCTAATGAGGAA
GCTATAAGTGCTAAGCAGGAACCATCCATCGATGCTGCAACCCTGCAACCTAAAGAGGAAGCTATGAAAACTGGCTGTGT
GGCACTTGTCTTGTGTTTAAACATTAGTGTTGATCCGCCGGATGTGATCAAAATCTCCCCTTGTGTAAGAAAGGAGTGCT
GGATAGATCCATTTTCTATGGCAGCTCCAAAAGCCCTTGAAACTATTGGGAAAACATTACACTCACAATATGAGCGCTGG
CAGCCAAAGGCTCGTTACAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30773.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis