Browse Element(s) Details


OsAffx.14800.1.S1_at

Description tigr:9633.m02152
TID=OsAffx.14800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:K5J14.1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2414011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24100NANA5+13823420..13824778Zinc knuckle family protein
LOC_Os05g24110NANA5+13827663..13829309hypothetical protein
LOC_Os05g24120Os.23706.1.A1_x_at1/115+13831965..13837549retrotransposon protein, putative, unclassified
LOC_Os05g24130OsAffx.14799.1.S1_at11/115+13841888..13842130hypothetical protein
LOC_Os05g24140OsAffx.14800.1.S1_at11/115+13847796..13850669expressed protein
LOC_Os05g24150OsAffx.26994.1.S1_at11/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24150OsAffx.11634.2.S1_x_at1/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24160Os.3740.3.S1_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.3.S1_x_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.3740.3.S1_s_at10/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.51834.1.S1_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.1.S1_x_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.2.S1_x_at4/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_x_at2/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_at1/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24170Os.46012.2.S1_x_at8/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.46012.3.S1_x_at6/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.27088.1.A1_x_at4/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.54691.1.S1_x_at1/115+13872144..13879440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008493molecular_functiontetracycline transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14800.1.S1_at--286--5191Chr05:13849120..13849390 (25 bp)
GCAATACTGTACTTCCTCAAGGTTC
LOC_Os05g24140
OsAffx.14800.1.S1_at--342--211Chr05:13849421..13849445 (25 bp)
ATTTGCTGCTCGTTATTGGCATTGC
LOC_Os05g24140
OsAffx.14800.1.S1_at--354--4931Chr05:13849439..13849463 (25 bp)
GCATTGCTGGAAGCCTTTCACAGGT
LOC_Os05g24140
OsAffx.14800.1.S1_at--821--2111Chr05:13849870..13849892 (23 bp)
ACAGGTTCCTTATCTTGGTGCAAGC
LOC_Os05g24140
OsAffx.14800.1.S1_at--845--7051Chr05:13849902..13849925 (24 bp)
GTAAGCATTTTGGTCAACCCTTCTA
LOC_Os05g24140
OsAffx.14800.1.S1_at--608--10791Chr05:13850036..13850060 (25 bp)
TTGTATCCAAACGAGCAGGGCCTTT
LOC_Os05g24140
OsAffx.14800.1.S1_at--1080--7711Chr05:13850202..13850226 (25 bp)
GGGTGTCTCACTGGAATAAGCTCAA
LOC_Os05g24140
OsAffx.14800.1.S1_at--393--10151Chr05:13850239..13850263 (25 bp)
TATCGCCTATAGTTTTTTCTCCTCT
LOC_Os05g24140
OsAffx.14800.1.S1_at--417--9531Chr05:13850207..13850447 (25 bp)
TCTCACTGCTTGGTTCCTATCAGAA
LOC_Os05g24140
OsAffx.14800.1.S1_at--907--5531Chr05:13850445..13850469 (25 bp)
GAAACTGCACCTTTCAACTTCAGAG
LOC_Os05g24140
OsAffx.14800.1.S1_at--706--9651Chr05:13850464..13850488 (25 bp)
TCAGAGGTTTCAGCCTTGCTTGTGC
LOC_Os05g24140
Target Sequence 
GCAATACTGTACTTCCTCAAGGTTCAATTCCAATATAGCAAGAACCAGTATGCCAATTTGCTGCTCGTTATTGGCATTGC
TGGAAGCCTTTCACAGGTTCCTTATCTTGGTGCAAGCTTTGTGATTGTAAGCATTTTGGTCAACCCTTCTATAAGGAGCA
TTGTATCCAAACGAGCAGGGCCTTTTGAGCAGGGAATGGTTCAAGGGTGTCTCACTGGAATAAGCTCAACTGCAAATGTG
ATATCGCCTATAGTTTTTTCTCCTCTCACTGCTTGGTTCCTATCAGAAACTGCACCTTTCAACTTCAGAGGTTTCAGCCT
TGCTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis