Browse Element(s) Details


OsAffx.30773.1.S1_x_at

Description tigr:9640.m00093
TID=OsAffx.30773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0191611/11Double-stranded RNA binding motif family protein, expressed
LOC_Os11g018697/11Double-stranded RNA binding motif family protein, expressed
LOC_Os05g241605/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01870Os.47463.1.S1_x_at6/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.14491.2.S1_x_at5/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880Os.55160.1.S1_at11/1112+514426..516055expressed protein
LOC_Os12g01890OsAffx.31545.2.S1_x_at11/1112+520227..521682hypothetical protein
LOC_Os12g01890OsAffx.31545.2.S1_at11/1112+520227..521682hypothetical protein
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910OsAffx.18630.1.S1_at8/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01910OsAffx.31542.1.S1_x_at7/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01916Os.51834.1.S1_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916Os.3740.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.2.S1_x_at7/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.3.S1_x_at5/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30773.1.S1_x_at--120--6351Chr12:535849..535873 (25 bp)
GATGCTCACGATTCTGATGTCCTAA
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--876--6252Chr12:535834..535858 (25 bp)
GATGTCCTAATGCAGCCAACAGTAA
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--1033--2112Chr12:535805..535829 (25 bp)
ACAGGAGGCATCTTGTGGCACTCTG
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--240--2011Chr12:535786..535810 (25 bp)
ACTCTGTTCCTGCAACCTTGTGAGG
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--111--1452Chr12:535748..535772 (25 bp)
AGAAGCTGAGCCACCTAGAGATATT
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--607--5973Chr12:535702..535726 (25 bp)
GAGAACCAACACAGTGACGCTGCAT
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--111--5813Chr12:535687..535711 (25 bp)
GACGCTGCATTGGTGCAACCTGATG
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--456--8093Chr12:535643..535667 (25 bp)
GGAGCCATCCAGAGATATTTCAGTG
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--451--953Chr12:535584..535608 (25 bp)
AGGAACCATCCATCGATGCTGCAAT
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--1108--952Chr12:535524..535548 (25 bp)
AGGAGCCATTCATCGATACTGCAAT
LOC_Os12g01916
OsAffx.30773.1.S1_x_at--98--6031Chr12:535452..535476 (25 bp)
GAGATACTGTAATTTCCCAACTTAA
LOC_Os12g01916
Target Sequence 
GATGCTCACGATTCTGATGTCCTAATGCAGCCAACAGTAATAACACAGGAGGCATCTTGTGGCACTCTGTTCCTGCAACC
TTGTGAGGAAGCTAAAAGAGTAGAAGCTGAGCCACCTAGAGATATTGAAATGGTACAGCCTGATAAGGAGAACCAACACA
GTGACGCTGCATTGGTGCAACCTGATGATGAAGCTAGAGTAGAACAGGAGCCATCCAGAGATATTTCAGTGGTGCAACCT
AATGAGGAAGCTATAAGTGGTAAGCAGGAACCATCCATCGATGCTGCAATTCTGCAACCTAAAGAGGAAGCTTCAAGTGT
AAAGCAGGAGCCATTCATCGATACTGCAATGCTGCAAGCTTGTAAGGAAGCTGGAAGTGTAGAACTTGGGCCAGCCAGAG
ATACTGTAATTTCCCAACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30773.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis