Browse Element(s) Details


Os.16743.1.S1_at

Description gb:AK067362.1
DB_XREF= gi:32977380
TID=Os.16743.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102P17, full insert sequence.
FL= gb:AK067362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0193011/11expressed protein
LOC_Os11g018802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910OsAffx.18630.1.S1_at8/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01910OsAffx.31542.1.S1_x_at7/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01916Os.51834.1.S1_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916Os.3740.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.2.S1_x_at7/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.3.S1_x_at5/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01960OsAffx.31546.2.S1_at11/1112+567945..569943expressed protein
LOC_Os12g01970OsAffx.19451.2.S1_s_at11/1112+576960..578223hypothetical protein
LOC_Os12g01970OsAffx.19451.3.S1_x_at1/1112+576960..578223hypothetical protein
LOC_Os12g01980OsAffx.31547.1.S1_at11/1112+578828..579954hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16743.1.S1_at--169--9631Chr12:554548..554572 (25 bp)
TCAGGCAGACACATCGCAGGTATGT
LOC_Os12g01930
Os.16743.1.S1_at--206--8972Chr12:554377..554401 (25 bp)
TGAAACTGCTTCTGGGCCACTTTTT
LOC_Os12g01930
Os.16743.1.S1_at--379--7611Chr12:554300..554324 (25 bp)
GGGCAACAATGGAAGCGTTTCTCTT
LOC_Os12g01930
Os.16743.1.S1_at--794--8831Chr12:554244..554268 (25 bp)
TGATTTGGTCGTTTCTCATGTCTCA
LOC_Os12g01930
Os.16743.1.S1_at--141--9531Chr12:554231..554255 (25 bp)
TCTCATGTCTCATGGTATTCCCCTT
LOC_Os12g01930
Os.16743.1.S1_at--550--10211Chr12:554216..554240 (25 bp)
TATTCCCCTTCCCAATCAGGTGATT
LOC_Os12g01930
Os.16743.1.S1_at--408--1052Chr12:554199..554223 (25 bp)
AGGTGATTCGTCTACTAGGTCTGAA
LOC_Os12g01930
Os.16743.1.S1_at--314--7071Chr12:554161..554185 (25 bp)
GTAAGTGTATTTAGGCATGATTCCA
LOC_Os12g01930
Os.16743.1.S1_at--324--691Chr12:554137..554161 (25 bp)
ATGAGTCATGGGTATGCAACAGCTT
LOC_Os12g01930
Os.16743.1.S1_at--165--5151Chr12:554122..554146 (25 bp)
GCAACAGCTTGAGATCGCAATGTAT
LOC_Os12g01930
Os.16743.1.S1_at--626--5471Chr12:554096..554120 (25 bp)
GAACTCTTTATATCCTAGTCTGTTG
LOC_Os12g01930
Target Sequence 
TCAGGCAGACACATCGCAGGTATGTGAAGCCCTGCTGACTCTGCTTGTTGAGGTTGCGCAGAAACGGAGGCATGAGATGG
CTATGAAAGATGAATAAAAATGTTAGTGTTGCTCTGACAGATATTTGTAATCGTAGACTTCTGTTGTTGAATGTACTGTC
CANAACTTATGCTGAAACTGCTTCTGGGCCACTTTTTTTTGTTTGGTTTACAGAAGCTTCATATATCAACTGAATCTGAA
AGGTGAAAAGGGCAACAATGGAAGCGTTTCTCTTTTTTTTNNNNATTTACCATAAGGAAATTGTATGATTTGGTCGTTTC
TCATGTCTCATGGTATTCCCCTTCCCAATCAGGTGATTCGTCTACTAGGTCTGAATTTGATTATGGTTGTAAGTGTATTT
AGGCATGATTCCATGAGTCATGGGTATGCAACAGCTTGAGATCGCAATGTATAGAACTCTTTATATCCTAGTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis