Browse Element(s) Details


Os.16743.3.S1_at

Description gb:AK058945.1
DB_XREF= gi:32968963
TID=Os.16743.3
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H10, full insert sequence.
FL= gb:AK058945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0188011/11hypothetical protein
LOC_Os12g019406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01880OsAffx.6960.1.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_x_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_s_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_x_at10/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.1.S1_at2/1111+476028..483647hypothetical protein
LOC_Os11g01890Os.9846.1.S1_x_at11/1111+483798..486696expressed protein
LOC_Os11g01890Os.9846.2.S1_at10/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.1.S1_at2/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.2.S1_x_at1/1111+483798..486696expressed protein
LOC_Os11g01900OsAffx.30774.1.S1_s_at11/1111+487827..488893hypothetical protein
LOC_Os11g01910NANA11+489197..489939hypothetical protein
LOC_Os11g01920NANA11+492407..498499retrotransposon protein, putative, unclassified
LOC_Os11g01930NANA11+499177..501200retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16743.3.S1_at--1008--8292Chr12:558402..558426 (25 bp)
GGCTATATGTGAGAGAACTTTTGGT
LOC_Os12g01940
Os.16743.3.S1_at--1125--772Chr12:558396..558420 (25 bp)
ATGTGAGAGAACTTTTGGTGTTAGT
LOC_Os12g01940
Os.16743.3.S1_at--135--6332Chr12:558366..558390 (25 bp)
GATGAATTGTATTCCCAGCCTCAGC
LOC_Os12g01940
Os.16743.3.S1_at--467--10452Chr12:558339..558363 (25 bp)
TTAGACCTGTAACTCGATATGATCA
LOC_Os12g01940
Os.16743.3.S1_at--567--5832Chr12:558336..558360 (25 bp)
GACCTGTAACTCGATATGATCACTG
LOC_Os12g01940
Os.16743.3.S1_at--581--7052Chr12:558331..558355 (25 bp)
GTAACTCGATATGATCACTGAAGGA
LOC_Os12g01940
Os.16743.3.S1_at--597--5191Chr11:480141..480165 (25 bp)
GAATTCGAACGTGTAATCATTGAAG
LOC_Os11g01880
Os.16743.3.S1_at--1126--3971Chr11:480132..480156 (25 bp)
CGTGTAATCATTGAAGGCAAGCAGC
LOC_Os11g01880
Os.16743.3.S1_at--49--8231Chr11:480117..480141 (25 bp)
GGCAAGCAGCTTGTTGTTGGATAAG
LOC_Os11g01880
Os.16743.3.S1_at--402--2711Chr11:480114..480138 (25 bp)
AAGCAGCTTGTTGTTGGATAAGATA
LOC_Os11g01880
Os.16743.3.S1_at--763--10831Chr11:480101..480125 (25 bp)
TTGGATAAGATAGATAGCTCATTGC
LOC_Os11g01880
Target Sequence 
GGCTATATGTGAGAGAACTTTTGGTGTTAGTATNCTGATGAATTGTATTCCCAGCCTCAGCNNNNNNNNNNNNNNNNNNT
GTTAGACCTGTAACTCGATATGATCACTGAAGGAGAAGTGTAGGAGTAAGAAGAATGAATTATTAAANNNNGNNNNNNNT
NCNGGNGAATTCGAACGTGTAATCATTGAAGGCAAGCAGCTTGTTGTTGGATAAGATAGATAGCTCATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16743.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis