Browse Element(s) Details


Os.3740.1.S1_x_at

Description gb:AB036988.1
DB_XREF= gi:9229938
GEN=Odb1
TID=Os.3740.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3740 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for dsRNA-binding protein ODB1, complete cds.
PROD=dsRNA-binding protein ODB1
FL= gb:AK103543.1 gb:AB036988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0191611/11Double-stranded RNA binding motif family protein, expressed
LOC_Os11g018693/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01870Os.47463.1.S1_x_at6/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.14491.2.S1_x_at5/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880Os.55160.1.S1_at11/1112+514426..516055expressed protein
LOC_Os12g01890OsAffx.31545.2.S1_x_at11/1112+520227..521682hypothetical protein
LOC_Os12g01890OsAffx.31545.2.S1_at11/1112+520227..521682hypothetical protein
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910OsAffx.18630.1.S1_at8/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01910OsAffx.31542.1.S1_x_at7/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01916Os.51834.1.S1_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916Os.3740.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.2.S1_x_at7/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.3.S1_x_at5/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3740.1.S1_x_at--817--8031Chr12:535346..535370 (25 bp)
GGAGTAGACACCGAGAACGGAAACT
LOC_Os12g01916
Os.3740.1.S1_x_at--954--5851Chr12:535202..535226 (25 bp)
GAGCGAAGAATAAGCCGTGGTTGTT
LOC_Os12g01916
Os.3740.1.S1_x_at--413--2291Chr12:535171..535195 (25 bp)
AAATGCAATAGCCTTCCAGTGTCAG
LOC_Os12g01916
Os.3740.1.S1_x_at--699--291Chr12:535164..535188 (25 bp)
ATAGCCTTCCAGTGTCAGTAGTGTG
LOC_Os12g01916
Os.3740.1.S1_x_at--256--9231Chr12:535157..535181 (25 bp)
TCCAGTGTCAGTAGTGTGTTCACCT
LOC_Os12g01916
Os.3740.1.S1_x_at--681--7472Chr12:535144..535168 (25 bp)
GTGTGTTCACCTGCAGAGGTGTGAA
LOC_Os12g01916
Os.3740.1.S1_x_at--1108--7431Chr12:535126..535150 (25 bp)
GTGTGAAACCTGAATGGCTGGCTTT
LOC_Os12g01916
Os.3740.1.S1_x_at--494--8952Chr12:535116..535140 (25 bp)
TGAATGGCTGGCTTTTCCAGTTTAA
LOC_Os12g01916
Os.3740.1.S1_x_at--939--232Chr12:535040..535064 (25 bp)
ATATTTGTCATTGTTAGCTAGGCAT
LOC_Os12g01916
Os.3740.1.S1_x_at--522--5271Chr12:534997..535021 (25 bp)
GAATGAAATGTATTGCCTGCTGCTT
LOC_Os12g01916
Os.3740.1.S1_x_at--115--9191Chr12:534984..535008 (25 bp)
TGCCTGCTGCTTTAGTGAGTATTAC
LOC_Os12g01916
Target Sequence 
GGAGTAGACACCGAGAACGGAAACTAATGGGGAAGCTACGAACATGAAGGAGACNCCAAAGAACTCTGCAATATGTAATT
CTCCAGAGACAAAGGATTTTGGAAATATTACAGCAATGGGTTCAGATCCTCCCACAACTAATATGAGCGAAGAATAAGCC
GTGGTTGTTGAATCAAAATGCAATAGCCTTCCAGTGTCAGTAGTGTGTTCACCTGCAGAGGTGTGAAACCTGAATGGCTG
GCTTTTCCAGTTTAAAAAGAGGCAGCTGGAATAGGAAGATGTATGTGGGCTGAGAATAGTTAGTTCATATTTGTCATTGT
TAGCTAGGCATTTGTATGCCTGATGATATGAATGAAATGTATTGCCTGCTGCTTTAGTGAGTATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3740.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis