Browse Element(s) Details


OsAffx.31542.1.S1_x_at

Description tigr:9640.m00074
TID=OsAffx.31542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0174011/11Protein kinase domain containing protein, expressed
LOC_Os11g017408/11Protein kinase domain containing protein, expressed
LOC_Os12g019107/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01690OsAffx.31541.1.S1_s_at1/1112+413959..414621PRA1 family protein
LOC_Os12g01700Os.47316.2.S1_at8/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01700Os.47316.1.S1_at2/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01710OsAffx.18625.4.S1_x_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.5.S1_s_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.4.S1_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_x_at6/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_at2/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.5875.1.S1_at1/1112+421126..424359hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_x_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.6959.1.S1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.30274.1.A1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01750OsAffx.19447.1.S1_x_at11/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01750OsAffx.19447.1.S1_at9/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01760Os.46305.1.S1_at11/1112+463699..467349Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31542.1.S1_x_at--235--8592Chr12:439713..439737 (25 bp)
TGGTTTGGCCAAGATGCTAGGTGCT
LOC_Os12g01740
OsAffx.31542.1.S1_x_at--171--2332Chr12:439684..439708 (25 bp)
AAAGTCATATTGCTACTCGAGTTAT
LOC_Os12g01740
OsAffx.31542.1.S1_x_at--453--811Chr12:439520..439685 (25 bp)
ATGGGTACTTTTGGCTATGTTGCGC
LOC_Os12g01740
OsAffx.31542.1.S1_x_at--936--6671Chr12:439502..439526 (25 bp)
GTTGCGCCCGAGTATGCTAACAGTG
LOC_Os12g01740
OsAffx.31542.1.S1_x_at--509--1293Chr12:533218..533242 (25 bp)
AGATCCCATTGACTATGATCGCCCT
LOC_Os12g01910
OsAffx.31542.1.S1_x_at--589--712Chr12:533232..533255 (24 bp)
ATGATCGCCCTCCAGATGAGGTAAA
LOC_Os12g01910
OsAffx.31542.1.S1_x_at--664--6153Chr12:533396..533419 (24 bp)
GAGGTAAACCTAGTTGACTGGCTTA
LOC_Os12g01910
OsAffx.31542.1.S1_x_at--1143--2373Chr12:533497..533521 (25 bp)
AAACGTGCCCTTTTGACAGCTCTGA
LOC_Os12g01910
OsAffx.31542.1.S1_x_at--515--2153Chr12:533512..533536 (25 bp)
ACAGCTCTGAGGTGCATCGATTTGA
LOC_Os12g01910
OsAffx.31542.1.S1_x_at--87--10873Chr12:533578..533602 (25 bp)
TTGGACTCTAATGAACCCATTCCTC
LOC_Os12g01910
OsAffx.31542.1.S1_x_at--710--1333Chr12:534060..534084 (25 bp)
AGAGTGATGCCCCTGAAAATGAGAT
LOC_Os12g01910
Target Sequence 
TGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGCTATGTTGCGCCCG
AGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGT
AGAGATCCCATTGACTATGATCGCCCTCCAGATGAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCAACAGACG
ATCAGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGA
GGTGCATCGATTTGAATTCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCT
CAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAAACCGAGCCATTAAGAGGCAAGAGCAGCAGCGG
CAAGAGTGATGCCCCTGAAAATGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31542.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis