Browse Element(s) Details


Os.12549.1.S1_at

Description gb:CB629063
DB_XREF= gi:29624052
DB_XREF=OSIIEb05A09.f
CLONE=OSIIEb05A09
TID=Os.12549.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12549 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g017408/11Protein kinase domain containing protein, expressed
LOC_Os12g017403/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein
LOC_Os11g01730Os.56166.1.S1_at2/1111+391254..395763laccase, putative
LOC_Os11g01740Os.12549.1.S1_s_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.6829.1.S1_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.12549.1.S1_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740OsAffx.31542.1.S1_x_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01750OsAffx.30769.1.S1_at11/1111+401578..404374hypothetical protein
LOC_Os11g01760NANA11+407138..407431hypothetical protein
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12549.1.S1_at--1032--7052Chr12:442355..442379 (25 bp)
GTAATAAGGTTGGTTTCTTCTCCAT
LOC_Os12g01740
Os.12549.1.S1_at--904--9592Chr12:442354..442378 (25 bp)
TAATAAGGTTGGTTTCTTCTCCATC
LOC_Os12g01740
Os.12549.1.S1_at--941--371Chr11:400538..400562 (25 bp)
ATCACCTACCCACCTGATAACTCCT
LOC_Os11g01740
Os.12549.1.S1_at--908--3372Chr12:442264..442288 (25 bp)
CACCACTATCGTCGTCTTCTTATCA
LOC_Os12g01740
Os.12549.1.S1_at--1036--9431Chr11:400203..400222 (20 bp)
TCTGGTTCCTCACCAAAGGTACTTG
LOC_Os11g01740
Os.12549.1.S1_at--1087--8571NONE
TGGTTCCTCACCAAAGGTACTTGAT
NONE
Os.12549.1.S1_at--919--7891NONE
GGTTCCTCACCAAAGGTACTTGATG
NONE
Os.12549.1.S1_at--936--6691NONE
GTTCCTCACCAAAGGTACTTGATGA
NONE
Os.12549.1.S1_at--380--7131Chr11:399569..399593 (25 bp)
GTCATCAAACTCCACTCTGACAGAT
LOC_Os11g01740
Os.12549.1.S1_at--234--9611Chr11:399568..399592 (25 bp)
TCATCAAACTCCACTCTGACAGATT
LOC_Os11g01740
Os.12549.1.S1_at--1064--371Chr11:399566..399590 (25 bp)
ATCAAACTCCACTCTGACAGATTCT
LOC_Os11g01740
Target Sequence 
GTAATAAGGTTGGTTTCTTCTCCATCACTCCCATCACCTACCCACCTGATAACTCCTCTCCTCCTGCCGCCGCTGCTGCC
ACACTCCACCACTATCGTCGTCTTCTTATCACCCCTACCTCACCTGCAGTCCTGCACCAAGCAAGCAATCTCCAAAGTGC
AAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAGGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGT
CGCTCTTCAGCATTCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAGGTACTTGATGATCCGAA
GATGTCATCAAACTCCACTCTGACAGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis