Browse Element(s) Details

Os.47425.1.A1_s_at

Description

gb:BX898215
DB_XREF= gi:40486939
DB_XREF=BX898215
CLONE=p834c09p3
TID=Os.47425.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47425 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g01770	11/11	protein phosphatase 2c, putative, expressed
LOC_Os11g01790	11/11	protein phosphatase 2c, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g01750	OsAffx.19447.1.S1_x_at	11/11	12	+	456260..456577	Zinc finger, C3HC4 type family protein
LOC_Os12g01750	OsAffx.19447.1.S1_at	9/11	12	+	456260..456577	Zinc finger, C3HC4 type family protein
LOC_Os12g01760	Os.46305.1.S1_at	11/11	12	+	463699..467349	Leucine Rich Repeat family protein, expressed
LOC_Os12g01770	OsAffx.19448.1.S1_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.6814.2.S1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_at	4/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.49767.1.S1_x_at	1/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01780	OsAffx.442.1.S1_x_at	7/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_x_at	6/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_s_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_x_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.24587.1.S1_x_at	3/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.4.S1_x_at	2/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.19052.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.442.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790	NA	NA	12	+	477528..481911	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800	OsAffx.30771.2.S1_at	11/11	12	+	482987..485738	DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810	NA	NA	12	+	487872..488606	hypothetical protein
LOC_Os12g01820	Os.53829.1.S1_at	3/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01820	OsAffx.5723.1.A1_x_at	2/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01840	OsAffx.31544.1.S1_at	11/11	12	+	493758..494114	hypothetical protein
LOC_Os12g01830	Os.16506.1.A1_at	11/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01830	Os.51492.1.S1_at	1/11	12	+	493933..498310	nuclease, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005634	cellular_component	nucleus
GO:0015071	molecular_function	protein phosphatase type 2C activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47425.1.A1_s_at--891--753	2	Chr12:471015..471039 (25 bp)	GTGGCTCGGGTGAACTCGGTGGTGA	LOC_Os12g01770
Os.47425.1.A1_s_at--7--661	2	Chr12:471117..471141 (25 bp)	GATTGATAACAGTCGCTTTCGTTGC	LOC_Os12g01770
Os.47425.1.A1_s_at--815--549	2	Chr12:471144..471168 (25 bp)	GAAAACGTAATCCAGAGGGTTTGAT	LOC_Os12g01770
Os.47425.1.A1_s_at--881--785	2	Chr12:471161..471185 (25 bp)	GGTTTGATTACATGCTTTAAATGGC	LOC_Os12g01770
Os.47425.1.A1_s_at--524--1	2	Chr12:471191..471215 (25 bp)	ATTAGGGAGACGCTTTAGAAGTTGA	LOC_Os12g01770
Os.47425.1.A1_s_at--184--183	2	Chr12:471200..471224 (25 bp)	ACGCTTTAGAAGTTGATTGACGTAA	LOC_Os12g01770
Os.47425.1.A1_s_at--523--1075	2	Chr12:471216..471240 (25 bp)	TTGACGTAAACGTATGTCGCATTCA	LOC_Os12g01770
Os.47425.1.A1_s_at--750--189	2	Chr12:471225..471249 (25 bp)	ACGTATGTCGCATTCAGGTTGTTGA	LOC_Os12g01770
Os.47425.1.A1_s_at--810--515	2	Chr12:471254..471278 (25 bp)	GAATAGGGACCGATACTGCTGCTGC	LOC_Os12g01770
Os.47425.1.A1_s_at--89--811	2	Chr12:471260..471284 (25 bp)	GGACCGATACTGCTGCTGCTATCCT	LOC_Os12g01770
Os.47425.1.A1_s_at--463--79	2	Chr12:471341..471365 (25 bp)	ATGTGGTGGCCTTTGTTTGATTTAT	LOC_Os12g01770

Target Sequence

GTGGCTCGGGTGAACTCGGTGGTGAGGCTTCCGCGGATGGACGCCGTGCTGAGCTGGCGGCGGCGGTCGACGTCGCTCGA
GGAAGACGACGATGCAAGGATTGATTGATAACAGTCGCTTTCGTTGCTGGAAAACGTAATCCAGAGGGTTTGATTACATG
CTTTAAATGGCAAAAAATTAGGGAGACGCTTTAGAAGTTGATTGACGTAAACGTATGTCGCATTCAGGTTGTTGAGTTGG
AATAGGGACCGATACTGCTGCTGCTATCCTCCCTCTCTTGCTTAACTTGATTGTAGTAGCTGAAAATGATTGGCTAGCTG
TTTTGGATGTGGTGGCCTTTGTTTGATTTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis