Browse Element(s) Details


OsAffx.19447.1.S1_at

Description tigr:9640.m00075
TID=OsAffx.19447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g017509/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01750OsAffx.19447.1.S1_x_at11/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01750OsAffx.19447.1.S1_at9/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01760Os.46305.1.S1_at11/1112+463699..467349Leucine Rich Repeat family protein, expressed
LOC_Os12g01770OsAffx.19448.1.S1_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.6814.2.S1_s_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.47425.1.A1_s_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.47425.1.A1_at4/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.49767.1.S1_x_at1/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01780OsAffx.442.1.S1_x_at7/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_x_at6/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_s_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_x_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.24587.1.S1_x_at3/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.4.S1_x_at2/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.19052.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.442.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790NANA12+477528..481911retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0006952biological_processdefense response
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19447.1.S1_at--876--3931Chr12:456330..456354 (25 bp)
CGGCGTGCGGGCATGTTTTCCACCA
LOC_Os12g01750
OsAffx.19447.1.S1_at--72--8371Chr12:456331..456355 (25 bp)
GGCGTGCGGGCATGTTTTCCACCAG
LOC_Os12g01750
OsAffx.19447.1.S1_at--881--4651Chr12:456332..456356 (25 bp)
GCGTGCGGGCATGTTTTCCACCAGG
LOC_Os12g01750
OsAffx.19447.1.S1_at--1058--3991Chr12:456333..456357 (25 bp)
CGTGCGGGCATGTTTTCCACCAGGA
LOC_Os12g01750
OsAffx.19447.1.S1_at--236--7311Chr12:456334..456358 (25 bp)
GTGCGGGCATGTTTTCCACCAGGAG
LOC_Os12g01750
OsAffx.19447.1.S1_at--1129--9131Chr12:456335..456359 (25 bp)
TGCGGGCATGTTTTCCACCAGGAGT
LOC_Os12g01750
OsAffx.19447.1.S1_at--89--4671Chr12:456336..456360 (25 bp)
GCGGGCATGTTTTCCACCAGGAGTG
LOC_Os12g01750
OsAffx.19447.1.S1_at--618--3971Chr12:456337..456361 (25 bp)
CGGGCATGTTTTCCACCAGGAGTGC
LOC_Os12g01750
OsAffx.19447.1.S1_at--1078--7571Chr12:456338..456362 (25 bp)
GGGCATGTTTTCCACCAGGAGTGCA
LOC_Os12g01750
Target Sequence 
CGGCGTGCGGGCATGTTTTCCACCAGGAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis