Browse Element(s) Details


Os.49767.1.S1_x_at

Description gb:AB118006.1
DB_XREF= gi:42733499
TID=Os.49767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) bip119 mRNA for BRI1-KD interacting protein 119, partial cds
DEF=Oryza sativa (japonica cultivar-group) bip119 mRNA for BRI1-KD interacting protein 119, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g285509/11expressed protein
LOC_Os12g156701/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g369701/11expressed protein
LOC_Os12g017701/11protein phosphatase 2c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein
LOC_Os09g28530NANA9+17353470..17353886hypothetical protein
LOC_Os09g28540OsAffx.6430.1.S1_at11/119+17355243..17356377hypothetical protein
LOC_Os09g28550Os.49767.1.S1_x_at9/119+17358273..17359272expressed protein
LOC_Os09g28550Os.49767.1.S1_at8/119+17358273..17359272expressed protein
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49767.1.S1_x_at--876--4095Chr12:470875..470894 (20 bp)
CGACGTCGTCGGAGGAGAGCACCAT
LOC_Os12g01770
Os.49767.1.S1_x_at--892--532Chr09:17358492..17358516 (25 bp)
ATCGCGCACTGCAAGAACTCCATCA
LOC_Os09g28550
Os.49767.1.S1_x_at--130--1791Chr09:17358468..17358492 (25 bp)
ACCGTGGCCAAGTGAATCGATCGAT
LOC_Os09g28550
Os.49767.1.S1_x_at--623--3051Chr09:17358454..17358478 (25 bp)
AATCGATCGATCGAGGCTAGTGTGT
LOC_Os09g28550
Os.49767.1.S1_x_at--893--1291Chr09:17358399..17358423 (25 bp)
AGATGCACATGTGCCGATCGCCATG
LOC_Os09g28550
Os.49767.1.S1_x_at--857--3311Chr09:17358394..17358418 (25 bp)
CACATGTGCCGATCGCCATGCGTGT
LOC_Os09g28550
Os.49767.1.S1_x_at--511--4591Chr09:17358360..17358384 (25 bp)
GCGCACACGACACGTACGAGAGCAT
LOC_Os09g28550
Os.49767.1.S1_x_at--593--3351Chr09:17358355..17358379 (25 bp)
CACGACACGTACGAGAGCATATATT
LOC_Os09g28550
Os.49767.1.S1_x_at--169--6431Chr09:17358330..17358354 (25 bp)
GATCAGGTTTTCAGTAGCTTTTGCG
LOC_Os09g28550
Os.49767.1.S1_x_at--284--9651NONE
TCAGTAGCTTTTGCGAGCTTCACAA
NONE
Os.49767.1.S1_x_at--170--4611NONE
GCGAGCTTCACAAAAAATCACAGAT
NONE
Target Sequence 
CGACGTCGTCGGAGGAGAGCACCATGGAGGAGCTGCAGAGCGCCATCGAGGCCGCCATCGCGCACTGCAAGAACTCCATC
ACCGTGGCCAAGTGAATCGATCGATCGAGGCTAGTGTGTAAAATGTAAAACTGTAAATGCGTGGTACGGAGATGCACATG
TGCCGATCGCCATGCGTGTCGCGCGCGCGCGCACACGACACGTACGAGAGCATATATTGATCAGGTTTTCAGTAGCTTTT
GCGAGCTTCACAAAAAATCACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49767.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis