Browse Element(s) Details


Os.5201.2.S1_x_at

Description gb:AK060764.1
DB_XREF= gi:32970782
TID=Os.5201.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A07, full insert sequence.
FL= gb:AK060764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2857011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein
LOC_Os09g28530NANA9+17353470..17353886hypothetical protein
LOC_Os09g28540OsAffx.6430.1.S1_at11/119+17355243..17356377hypothetical protein
LOC_Os09g28550Os.49767.1.S1_x_at9/119+17358273..17359272expressed protein
LOC_Os09g28550Os.49767.1.S1_at8/119+17358273..17359272expressed protein
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28580Os.57141.1.S1_at11/119+17389976..17391540expressed protein
LOC_Os09g28580Os.15898.1.S1_at10/119+17389976..17391540expressed protein
LOC_Os09g28590Os.38287.1.S1_at11/119+17392610..17394621DnaJ domain containing protein, expressed
LOC_Os09g28600Os.12364.1.S1_at11/119+17399032..17400186expressed protein
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0008152biological_processmetabolism
GO:0030154biological_processcell differentiation
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5201.2.S1_x_at--691--3871Chr09:17384979..17384999 (21 bp)
CTGTGGCTGGTTTTTTCCTAATCCA
LOC_Os09g28570
Os.5201.2.S1_x_at--839--3031Chr09:17384994..17385018 (25 bp)
AATCCAGTATGCTCACTTGTGGCAA
LOC_Os09g28570
Os.5201.2.S1_x_at--939--2391Chr09:17385031..17385055 (25 bp)
AAACTTTTTGACCTGTATGCCTCTG
LOC_Os09g28570
Os.5201.2.S1_x_at--592--2231Chr09:17387233..17387257 (25 bp)
AAATTCGTGGGTGTAGCTTCTGCGC
LOC_Os09g28570
Os.5201.2.S1_x_at--661--1551Chr09:17387247..17387271 (25 bp)
AGCTTCTGCGCCTGATGCGGTAGAA
LOC_Os09g28570
Os.5201.2.S1_x_at--408--6651Chr09:17387388..17387412 (25 bp)
GTTGTTGTGTGCATTGATCCGTCAT
LOC_Os09g28570
Os.5201.2.S1_x_at--442--9871Chr09:17387412..17387436 (25 bp)
TACAGTCAGACCCTTGCTAAGCTAT
LOC_Os09g28570
Os.5201.2.S1_x_at--871--3131Chr09:17387504..17387528 (25 bp)
AATTACACAGGCTATCGGCATACCG
LOC_Os09g28570
Os.5201.2.S1_x_at--568--311Chr09:17387523..17387547 (25 bp)
ATACCGTACAACCTTGGGCTTCTTG
LOC_Os09g28570
Os.5201.2.S1_x_at--1129--10251Chr09:17387554..17387578 (25 bp)
TTTGTTGTCTGTGTGCGTAGCTGAA
LOC_Os09g28570
Os.5201.2.S1_x_at--499--8971Chr09:17387575..17387599 (25 bp)
TGAAACATTCCCATATTTACCCCAG
LOC_Os09g28570
Target Sequence 
CTGTGGCTGGTTTTTTCCTAATCCAGTATGCTCACTTGTGGCAAGATCATCTTGACAAACTTTTTGACCTGTATGCCTCT
GGAAAGCTAAAGGTTTCCCTTGACCCGAAGAAATTCGTGGGTGTAGCTTCTGCGCCTGATGCGGTAGAATATCTTCATTC
TGGCAAGAGTGTTGGCAAGGTTGTTGTGTGCATTGATCCGTCATACAGTCAGACCCTTGCTAAGCTATAGTCTGTGGACA
TGAGATACATCATATTTCATCGTCTAGTCACGAGGAAGAACAGTGCAAAAAAGACAATTACACAGGCTATCGGCATACCG
TACAACCTTGGGCTTCTTGCTCCGTTTTGTTGTCTGTGTGCGTAGCTGAAACATTCCCATATTTACCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5201.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis