Browse Element(s) Details


Os.12364.1.S1_at

Description gb:AU101477
DB_XREF= gi:9865727
DB_XREF=AU101477
CLONE=E50740
TID=Os.12364.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12364 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2860011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28580Os.57141.1.S1_at11/119+17389976..17391540expressed protein
LOC_Os09g28580Os.15898.1.S1_at10/119+17389976..17391540expressed protein
LOC_Os09g28590Os.38287.1.S1_at11/119+17392610..17394621DnaJ domain containing protein, expressed
LOC_Os09g28600Os.12364.1.S1_at11/119+17399032..17400186expressed protein
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28640NANA9+17420209..17421449esterase, putative, expressed
LOC_Os09g28650Os.55582.1.S1_at9/119+17423563..17424621esterase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12364.1.S1_at--609--8091Chr09:17399830..17399854 (25 bp)
GGAGCCCGGCTCCAGCTTACAGTTA
LOC_Os09g28600
Os.12364.1.S1_at--88--10491Chr09:17399846..17399870 (25 bp)
TTACAGTTACAAGACTACTCCGAGT
LOC_Os09g28600
Os.12364.1.S1_at--55--9911Chr09:17399861..17399885 (25 bp)
TACTCCGAGTAGGAGCAGCAGCTGA
LOC_Os09g28600
Os.12364.1.S1_at--1021--4851Chr09:17399897..17399921 (25 bp)
GCTATTAGCCAAGACGAACCTTTTT
LOC_Os09g28600
Os.12364.1.S1_at--159--10371Chr09:17399917..17399941 (25 bp)
TTTTTAACCGTCCATTCTAGCAAGC
LOC_Os09g28600
Os.12364.1.S1_at--580--5271Chr09:17399970..17399994 (25 bp)
GAATGCGAGATTTTCACTCAGGTAT
LOC_Os09g28600
Os.12364.1.S1_at--390--6751Chr09:17399996..17400020 (25 bp)
GTTAACCTCGTTGTGTGGAGAGATC
LOC_Os09g28600
Os.12364.1.S1_at--6--7391Chr09:17400032..17400056 (25 bp)
GTGAGAGTGTGCTTCTTGTAATCTT
LOC_Os09g28600
Os.12364.1.S1_at--1008--9731Chr09:17400050..17400074 (25 bp)
TAATCTTGTTGGTTTCCGTTTGGAT
LOC_Os09g28600
Os.12364.1.S1_at--628--3031Chr09:17400115..17400139 (25 bp)
AATCGTGTCGTATACTCGTGTACTC
LOC_Os09g28600
Os.12364.1.S1_at--208--9431Chr09:17400130..17400154 (25 bp)
TCGTGTACTCCTGTGTGCTGAATAA
LOC_Os09g28600
Target Sequence 
GGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAG
ACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCA
GGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTT
TGGATTTTTGGAACAACATGCAATTTGGTTTGCATGNATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTG
AATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis