Browse Element(s) Details


Os.52444.1.S1_at

Description gb:AK067180.1
DB_XREF= gi:32977198
TID=Os.52444.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094M19, full insert sequence.
FL= gb:AK067180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2863011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28580Os.57141.1.S1_at11/119+17389976..17391540expressed protein
LOC_Os09g28580Os.15898.1.S1_at10/119+17389976..17391540expressed protein
LOC_Os09g28590Os.38287.1.S1_at11/119+17392610..17394621DnaJ domain containing protein, expressed
LOC_Os09g28600Os.12364.1.S1_at11/119+17399032..17400186expressed protein
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28640NANA9+17420209..17421449esterase, putative, expressed
LOC_Os09g28650Os.55582.1.S1_at9/119+17423563..17424621esterase, putative, expressed
LOC_Os09g28660Os.48379.1.A1_x_at11/119+17426502..17427686esterase, putative, expressed
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52444.1.S1_at--493--6391Chr09:17416940..17416964 (25 bp)
GATCGAGGGCGCGTTACTGCTGCAC
LOC_Os09g28630
Os.52444.1.S1_at--853--4211Chr09:17417014..17417038 (25 bp)
CCGCGCTCACCGGTATGATATGGTG
LOC_Os09g28630
Os.52444.1.S1_at--866--6911Chr09:17417026..17417050 (25 bp)
GTATGATATGGTGCTACGCGTGCCC
LOC_Os09g28630
Os.52444.1.S1_at--614--7491Chr09:17417316..17417340 (25 bp)
GTGGAGTTCATATCCGCCGGGTCTC
LOC_Os09g28630
Os.52444.1.S1_at--155--3991Chr09:17417333..17417357 (25 bp)
CGGGTCTCCTGCCTGATTAAAAATT
LOC_Os09g28630
Os.52444.1.S1_at--658--9811Chr09:17417350..17417374 (25 bp)
TAAAAATTAGCTCCATCCGGATGCG
LOC_Os09g28630
Os.52444.1.S1_at--285--6331Chr09:17417369..17417393 (25 bp)
GATGCGCCCCGCGTTGAAGTCGTCG
LOC_Os09g28630
Os.52444.1.S1_at--389--9331Chr09:17417391..17417415 (25 bp)
TCGTAATGTATCGAACTTAGGGCTC
LOC_Os09g28630
Os.52444.1.S1_at--231--2051Chr09:17417405..17417429 (25 bp)
ACTTAGGGCTCGAATAATTTGGACT
LOC_Os09g28630
Os.52444.1.S1_at--893--211Chr09:17417421..17417445 (25 bp)
ATTTGGACTGATCATCCTTTCATGA
LOC_Os09g28630
Os.52444.1.S1_at--927--6431Chr09:17417430..17417454 (25 bp)
GATCATCCTTTCATGATTTCTGTGT
LOC_Os09g28630
Target Sequence 
GATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGC
TCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCT
GGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGA
CCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACG
TCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCT
CCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTAGGGCTCGAAT
AATTTGGACTGATCATCCTTTCATGATTTCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis