Browse Element(s) Details


Os.55582.1.S1_at

Description gb:AK108359.1
DB_XREF= gi:32993568
TID=Os.55582.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C08, full insert sequence.
FL= gb:AK108359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g286509/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28600Os.12364.1.S1_at11/119+17399032..17400186expressed protein
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28640NANA9+17420209..17421449esterase, putative, expressed
LOC_Os09g28650Os.55582.1.S1_at9/119+17423563..17424621esterase, putative, expressed
LOC_Os09g28660Os.48379.1.A1_x_at11/119+17426502..17427686esterase, putative, expressed
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55582.1.S1_at--311--1911Chr09:17424087..17424111 (25 bp)
ACGTGCTCCTGAGGGCATCCTCGAA
LOC_Os09g28650
Os.55582.1.S1_at--545--1071Chr09:17424098..17424122 (25 bp)
AGGGCATCCTCGAACAAAGGACCGA
LOC_Os09g28650
Os.55582.1.S1_at--368--6431NONE
GATCATGCTGCACCCGTTCTTCGGC
NONE
Os.55582.1.S1_at--1126--9251Chr09:17424185..17424209 (25 bp)
TCCGACGAGGCGGTCTACATAGCCT
LOC_Os09g28650
Os.55582.1.S1_at--77--4671Chr09:17424194..17424218 (25 bp)
GCGGTCTACATAGCCTCGAAGGTGT
LOC_Os09g28650
Os.55582.1.S1_at--589--8371Chr09:17424502..17424526 (25 bp)
GGCGTTCATAGCCAGCGCATGAACT
LOC_Os09g28650
Os.55582.1.S1_at--1152--3371Chr09:17424514..17424538 (25 bp)
CAGCGCATGAACTTCTCTTCTTCAT
LOC_Os09g28650
Os.55582.1.S1_at--277--10551NONE
TTCATCTGTGTATGCTTGCGGACTT
NONE
Os.55582.1.S1_at--1009--4671Chr09:17424551..17424575 (25 bp)
GCGGACTTGCAGCTGTATCTTGCTT
LOC_Os09g28650
Os.55582.1.S1_at--675--4731Chr09:17424562..17424586 (25 bp)
GCTGTATCTTGCTTGCCTGAGATTA
LOC_Os09g28650
Os.55582.1.S1_at--414--3631Chr09:17424569..17424593 (25 bp)
CTTGCTTGCCTGAGATTAATAAATC
LOC_Os09g28650
Target Sequence 
ACGTGCTCCTGAGGGCATCCTCGAACAAAGGACCGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGGCGGGAGC
ACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTTCGCGTGCCCGGGCGCAGTGAA
CGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGGGTGCGAGCGGCTGCTCG
TGTGCACGGCGCAGGAGGACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCGGG
AGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCAAGCAGCT
CATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAACTTCTCTTCTTCATCTGTGTATGCTTGCGGACTTGCAGCTGT
ATCTTGCTTGCCTGAGATTAATAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis