Browse Element(s) Details


Os.38287.1.S1_at

Description gb:AK101876.1
DB_XREF= gi:32987085
TID=Os.38287.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070H16, full insert sequence.
FL= gb:AK101876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2859011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28580Os.57141.1.S1_at11/119+17389976..17391540expressed protein
LOC_Os09g28580Os.15898.1.S1_at10/119+17389976..17391540expressed protein
LOC_Os09g28590Os.38287.1.S1_at11/119+17392610..17394621DnaJ domain containing protein, expressed
LOC_Os09g28600Os.12364.1.S1_at11/119+17399032..17400186expressed protein
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38287.1.S1_at--708--3191Chr09:17394028..17394052 (25 bp)
CAATCTTCCCGACAGAACCTTGAAA
LOC_Os09g28590
Os.38287.1.S1_at--532--371Chr09:17394151..17394175 (25 bp)
ATCACTTCACGTGAACTTGGTCAGA
LOC_Os09g28590
Os.38287.1.S1_at--1115--51Chr09:17394210..17394234 (25 bp)
ATTGCACACTTCTGATTCTGTTCCA
LOC_Os09g28590
Os.38287.1.S1_at--42--431Chr09:17394234..17394258 (25 bp)
ATCATCTGTTGTTCTTGGCTGTGGC
LOC_Os09g28590
Os.38287.1.S1_at--554--8491Chr09:17394255..17394279 (25 bp)
TGGCTCATGTTCTCTTAAGGCACGA
LOC_Os09g28590
Os.38287.1.S1_at--79--631Chr09:17394360..17394384 (25 bp)
ATGCTACCTCCTATTCTTCGAAGAA
LOC_Os09g28590
Os.38287.1.S1_at--201--5211Chr09:17394382..17394406 (25 bp)
GAATTCGGCGTGCACATGGAACGTA
LOC_Os09g28590
Os.38287.1.S1_at--108--1472Chr09:17394435..17394459 (25 bp)
AGAATGTACCTCTGATCATCCTCAA
LOC_Os09g28590
Os.38287.1.S1_at--918--6431Chr09:17394448..17394472 (25 bp)
GATCATCCTCAATGCAGTGTGACCA
LOC_Os09g28590
Os.38287.1.S1_at--841--3071Chr09:17394542..17394566 (25 bp)
AATCAGCTAACCACCTTTTGTCAAT
LOC_Os09g28590
Os.38287.1.S1_at--225--10411Chr09:17394557..17394581 (25 bp)
TTTTGTCAATTCAGGCCGCAGCGAA
LOC_Os09g28590
Target Sequence 
CAATCTTCCCGACAGAACCTTGAAATTGTTGCAACTGAAATTGAAATTGATGACATGATCGTTGAAAGTACTGCTGATTC
TGTGGAGCTTTTGTATCCTTGTAGGTGTGGTGATTATTTCTCAATCACTTCACGTGAACTTGGTCAGATTGGAATTTCAG
TCAGGGAGGACGGAGAGATGGAATTGCACACTTCTGATTCTGTTCCATCATCTGTTGTTCTTGGCTGTGGCTCATGTTCT
CTTAAGGCACGATTGGTTACAAATAAAACTTGATGGTAATTTTTTTTTGTTTGCATCTATCAGTATGCTTGCCAGCAAAG
ATCAATATAAAGATGCTACCTCCTATTCTTCGAAGAATTCGGCGTGCACATGGAACGTACATTGCTGTTTAAAAATGAAA
TTCTGGAAGAATGTACCTCTGATCATCCTCAATGCAGTGTGACCAATGAAATTTTGTAGTACTACATGTAAGCTCTGTTG
GTTGTAGGGTTATAAATGACATTTTGANCGTTGTAATCAGCTAACCACCTTTTGTCAATTCAGGCCGCAGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis