Browse Element(s) Details


Os.15898.1.S1_at

Description gb:AK063208.1
DB_XREF= gi:32973226
TID=Os.15898.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D03, full insert sequence.
FL= gb:AK063208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2858010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28580Os.57141.1.S1_at11/119+17389976..17391540expressed protein
LOC_Os09g28580Os.15898.1.S1_at10/119+17389976..17391540expressed protein
LOC_Os09g28590Os.38287.1.S1_at11/119+17392610..17394621DnaJ domain containing protein, expressed
LOC_Os09g28600Os.12364.1.S1_at11/119+17399032..17400186expressed protein
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15898.1.S1_at--45--1831Chr09:17390232..17390256 (25 bp)
ACGCTCCGATGGATGGCCGGTACGA
LOC_Os09g28580
Os.15898.1.S1_at--510--7691Chr09:17390199..17390223 (25 bp)
GGGTACGCCCGTAAAGAGGATATGT
LOC_Os09g28580
Os.15898.1.S1_at--845--7511Chr09:17390176..17390200 (25 bp)
GTGGCAACAGCCAGTCAAAATGTCA
LOC_Os09g28580
Os.15898.1.S1_at--432--6171Chr09:17390150..17390174 (25 bp)
GAGGATGCACAGACCAATCCTGTCC
LOC_Os09g28580
Os.15898.1.S1_at--47--3051Chr09:17390135..17390159 (25 bp)
AATCCTGTCCTAATGAATCTTTTCT
LOC_Os09g28580
Os.15898.1.S1_at--484--8991Chr09:17390122..17390146 (25 bp)
TGAATCTTTTCTTTACCCATGTATA
LOC_Os09g28580
Os.15898.1.S1_at--326--6951Chr09:17390096..17390120 (25 bp)
GTAGTTACTCGGTTACTCCATGTCA
LOC_Os09g28580
Os.15898.1.S1_at--970--3812Chr02:19981033..19981052 (20 bp)
CTCCATGTCATGTGTTTAGCTGTAA
NONE
Os.15898.1.S1_at--359--2351Chr09:17390023..17390047 (25 bp)
AAAGCTCACCTTGTACGTTAGCAGT
LOC_Os09g28580
Os.15898.1.S1_at--113--3651Chr09:17389993..17390017 (25 bp)
CTTCGCCTGTAACGCATATGCTTAA
LOC_Os09g28580
Os.15898.1.S1_at--845--631Chr09:17389976..17390000 (25 bp)
ATGCTTAACTTGTCGTTATCCGTGG
NONE
Target Sequence 
ACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTC
AGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTC
ATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGC
TTCGCCTGTAACGCATATGCTTAACTTGTCGTTATCCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis