Browse Element(s) Details


OsAffx.19448.1.S1_at

Description tigr:9640.m00078
TID=OsAffx.19448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein phosphatase 2C, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0177011/11protein phosphatase 2c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01750OsAffx.19447.1.S1_x_at11/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01750OsAffx.19447.1.S1_at9/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01760Os.46305.1.S1_at11/1112+463699..467349Leucine Rich Repeat family protein, expressed
LOC_Os12g01770OsAffx.19448.1.S1_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.6814.2.S1_s_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.47425.1.A1_s_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.47425.1.A1_at4/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.49767.1.S1_x_at1/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01780OsAffx.442.1.S1_x_at7/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_x_at6/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_s_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_x_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.24587.1.S1_x_at3/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.4.S1_x_at2/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.19052.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.442.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790NANA12+477528..481911retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800OsAffx.30771.2.S1_at11/1112+482987..485738DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810NANA12+487872..488606hypothetical protein
LOC_Os12g01820Os.53829.1.S1_at3/1112+489788..492207Sodium/hydrogen exchanger family protein
LOC_Os12g01820OsAffx.5723.1.A1_x_at2/1112+489788..492207Sodium/hydrogen exchanger family protein
LOC_Os12g01840OsAffx.31544.1.S1_at11/1112+493758..494114hypothetical protein
LOC_Os12g01830Os.16506.1.A1_at11/1112+493933..498310nuclease, putative, expressed
LOC_Os12g01830Os.51492.1.S1_at1/1112+493933..498310nuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19448.1.S1_at--232--10351Chr12:471668..471692 (25 bp)
TTTATCGACGAAGTATCCGCACTGT
LOC_Os12g01770
OsAffx.19448.1.S1_at--755--551Chr12:471682..471706 (25 bp)
ATCCGCACTGTCACACGGGACATTT
LOC_Os12g01770
OsAffx.19448.1.S1_at--515--3851Chr12:471719..471743 (25 bp)
CTGCAAGACTCGACTGTGATCACAT
LOC_Os12g01770
OsAffx.19448.1.S1_at--131--7411Chr12:471734..471758 (25 bp)
GTGATCACATATCCACGACGCACAA
LOC_Os12g01770
OsAffx.19448.1.S1_at--1038--5531Chr12:471766..471790 (25 bp)
GAAACGCTGCTTGATTGGTGGGAAA
LOC_Os12g01770
OsAffx.19448.1.S1_at--1044--5311Chr12:471822..471846 (25 bp)
GAAGGGAACGCGCTCCATTCACATG
LOC_Os12g01770
OsAffx.19448.1.S1_at--818--9091Chr12:471845..471869 (25 bp)
TGCTCCTTAGCTGGGAAATCTGGTG
LOC_Os12g01770
OsAffx.19448.1.S1_at--594--6811Chr12:471886..471910 (25 bp)
GTTTTCAGGAATAAGGAGCTCGCTA
LOC_Os12g01770
OsAffx.19448.1.S1_at--332--5911Chr12:471901..471925 (25 bp)
GAGCTCGCTATCTCACAATTGGTGA
LOC_Os12g01770
OsAffx.19448.1.S1_at--479--3171Chr12:471917..471941 (25 bp)
AATTGGTGACCAAAATCCTTGATGA
LOC_Os12g01770
OsAffx.19448.1.S1_at--47--3091Chr12:471942..471966 (25 bp)
AATCAATGTCTGGATTGCATGCGGG
LOC_Os12g01770
Target Sequence 
TTTATCGACGAAGTATCCGCACTGTCACACGGGACATTTGGGACAAAGTATCTGCAAGACTCGACTGTGATCACATATCC
ACGACGCACAACCCAGATGAAACGCTGCTTGATTGGTGGGAAAGAAGAACAGAGCAAAATGACAAGGACAAGACGAAGGG
AACGCGCTCCATTCACATGCTCCTTAGCTGGGAAATCTGGTGTGAAAGGAATAGGCGCGTTTTCAGGAATAAGGAGCTCG
CTATCTCACAATTGGTGACCAAAATCCTTGATGAAATCAATGTCTGGATTGCATGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis