Browse Element(s) Details

OsAffx.31544.1.S1_at

Description

tigr:9640.m00084
TID=OsAffx.31544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g01840	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g01770	OsAffx.19448.1.S1_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.6814.2.S1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_s_at	11/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.47425.1.A1_at	4/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01770	Os.49767.1.S1_x_at	1/11	12	+	468381..471996	protein phosphatase 2c, putative, expressed
LOC_Os12g01780	OsAffx.442.1.S1_x_at	7/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_x_at	6/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_s_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.2.S1_x_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.1.S1_at	4/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.24587.1.S1_x_at	3/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.30226.4.S1_x_at	2/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.19052.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780	OsAffx.442.1.S1_at	1/11	12	+	472751..476819	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790	NA	NA	12	+	477528..481911	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800	OsAffx.30771.2.S1_at	11/11	12	+	482987..485738	DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810	NA	NA	12	+	487872..488606	hypothetical protein
LOC_Os12g01820	Os.53829.1.S1_at	3/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01820	OsAffx.5723.1.A1_x_at	2/11	12	+	489788..492207	Sodium/hydrogen exchanger family protein
LOC_Os12g01840	OsAffx.31544.1.S1_at	11/11	12	+	493758..494114	hypothetical protein
LOC_Os12g01830	Os.16506.1.A1_at	11/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01830	Os.51492.1.S1_at	1/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01850	Os.54332.1.S1_at	11/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.31545.1.S1_x_at	6/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.19826.2.S1_at	1/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01860	NA	NA	12	+	503097..506429	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.47463.1.S1_x_at	6/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.14491.2.S1_x_at	5/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880	Os.55160.1.S1_at	11/11	12	+	514426..516055	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.31544.1.S1_at--901--719	2	Chr12:493967..493991 (25 bp)	GTCGTCTCCCTTGAAGCACCGGAGG	LOC_Os12g01840
OsAffx.31544.1.S1_at--452--931	2	Chr12:493961..493985 (25 bp)	TCCCTTGAAGCACCGGAGGATGTTC	LOC_Os12g01840
OsAffx.31544.1.S1_at--1153--349	1	Chr12:493934..493958 (25 bp)	CATGGATGCTCCTCTATTGTTTCAG	LOC_Os12g01840
OsAffx.31544.1.S1_at--189--5	1	Chr12:493919..493943 (25 bp)	ATTGTTTCAGCACTCTACCCCGGGA	LOC_Os12g01840
OsAffx.31544.1.S1_at--962--995	1	Chr12:493904..493928 (25 bp)	TACCCCGGGAGTTGCAGGCCTGAAG	LOC_Os12g01840
OsAffx.31544.1.S1_at--80--667	1	Chr12:493894..493918 (25 bp)	GTTGCAGGCCTGAAGCTATAGCCTA	LOC_Os12g01840
OsAffx.31544.1.S1_at--260--157	3	Chr12:493881..493905 (25 bp)	AGCTATAGCCTATAGCTGCTGCTTC	LOC_Os12g01840
OsAffx.31544.1.S1_at--626--907	1	Chr12:493862..493886 (25 bp)	TGCTTCACTTCTCCACTTGAACTCT	LOC_Os12g01840
OsAffx.31544.1.S1_at--541--365	1	Chr12:493855..493879 (25 bp)	CTTCTCCACTTGAACTCTACTCGGG	LOC_Os12g01840
OsAffx.31544.1.S1_at--726--555	1	Chr12:493815..493839 (25 bp)	GAAAGGTGGTGACTTGTGGGTCCCA	LOC_Os12g01840
OsAffx.31544.1.S1_at--220--337	2	Chr12:493792..493816 (25 bp)	CACCGGCCTGCTACAAGTGGGAAGG	LOC_Os12g01840

Target Sequence

GTCGTCTCCCTTGAAGCACCGGAGGATGTTCCCCATGGATGCTCCTCTATTGTTTCAGCACTCTACCCCGGGAGTTGCAG
GCCTGAAGCTATAGCCTATAGCTGCTGCTTCACTTCTCCACTTGAACTCTACTCGGGGAAGAAAAGCAAAGAGAAAGGTG
GTGACTTGTGGGTCCCACCGGCCTGCTACAAGTGGGAAGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis