Browse Element(s) Details


Os.53829.1.S1_at

Description gb:AK100300.1
DB_XREF= gi:32985509
TID=Os.53829.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077P16, full insert sequence.
FL= gb:AK100300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0182011/11Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g018203/11Sodium/hydrogen exchanger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53829.1.S1_at--213--8612Chr12:491972..491996 (25 bp)
TGGTGCGCGCCATGAGCGACAAGTT
LOC_Os12g01820
Os.53829.1.S1_at--31--4112Chr12:491988..492012 (25 bp)
CGACAAGTTCGACCTGCTGGTGGTT
LOC_Os12g01820
Os.53829.1.S1_at--201--6112Chr12:492107..492131 (25 bp)
GAGTGCTGGGCGACATGCTTGCCTC
LOC_Os12g01820
Os.53829.1.S1_at--216--5451Chr11:436680..436704 (25 bp)
GAACGACGCCGATTACTGACTTAAT
LOC_Os11g01820
Os.53829.1.S1_at--516--2052Chr12:492207..492231 (25 bp)
ACTTAATTGGCTAGTCATGCTGATA
NONE
Os.53829.1.S1_at--122--631Chr11:436714..436738 (25 bp)
ATGCTGATATACTACCACATTCCCT
LOC_Os11g01820
Os.53829.1.S1_at--907--9091Chr11:436755..436779 (25 bp)
TGCTCTGCTGCAATATTAGTGTTCT
LOC_Os11g01820
Os.53829.1.S1_at--1082--1091Chr11:436772..436796 (25 bp)
AGTGTTCTTCTCCAAGTAATCTTGT
LOC_Os11g01820
Os.53829.1.S1_at--483--6811Chr11:436797..436821 (25 bp)
GTTTTAGGATTTTTGGCGAGCTTCT
LOC_Os11g01820
Os.53829.1.S1_at--1123--8371Chr11:436811..436835 (25 bp)
GGCGAGCTTCTGTATTTTACTGTAC
LOC_Os11g01820
Os.53829.1.S1_at--959--8131Chr11:436865..436889 (25 bp)
GGACACAGTCTAGATTTCTATCGCT
LOC_Os11g01820
Target Sequence 
TGGTGCGCGCCATGAGCGACAAGTTCGACCTGCTGGTGGTTGGTAGGAGAGAGGGCGGCGGCGACGGCGCGGAGGGGTCG
TCGGCGGCGGCGCTGACGAGCGGGCTGTCGGAGTGGAGCGAGTTCCCGGAGCTGGGAGTGCTGGGCGACATGCTTGCCTC
CGCCGACTTCGCGGCCAAGGTCTCTATCCTCGTCGTCCAGCAGCAGGCCGCCACCAGGAACGACGCCGATTACTGACTTA
ATTGGCTAGTCATGCTGATATACTACCACATTCCCTCTGCTCTTCTCTTCTCTGCTCTGCTGCAATATTAGTGTTCTTCT
CCAAGTAATCTTGTGTTTTAGGATTTTTGGCGAGCTTCTGTATTTTACTGTACCTAGGATTGCATAATCTTGCTTTGATT
CTGGACACAGTCTAGATTTCTATCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis