Browse Element(s) Details


OsAffx.18628.1.S1_x_at

Description tigr:9639.m00078
TID=OsAffx.18628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0177011/11hypothetical protein
LOC_Os09g130501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01720NANA11+384860..386233expressed protein
LOC_Os11g01730Os.56166.1.S1_at2/1111+391254..395763laccase, putative
LOC_Os11g01740Os.12549.1.S1_s_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.6829.1.S1_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.12549.1.S1_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740OsAffx.31542.1.S1_x_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01750OsAffx.30769.1.S1_at11/1111+401578..404374hypothetical protein
LOC_Os11g01760NANA11+407138..407431hypothetical protein
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18628.1.S1_x_at--177--10575Chr12:455736..455757 (22 bp)
TTCTTCAGGCCAGCGGCGGGCGAGC
NONE
OsAffx.18628.1.S1_x_at--414--2913Chr12:456468..456491 (24 bp)
AAGGAGGCTGGCACGACGACGTCGC
NONE
OsAffx.18628.1.S1_x_at--290--4651Chr11:410171..410195 (25 bp)
GCGTCACCGATATGCACACGGTTAT
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--57--7111Chr11:410169..410193 (25 bp)
GTCACCGATATGCACACGGTTATGG
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--855--9671Chr11:410168..410192 (25 bp)
TCACCGATATGCACACGGTTATGGC
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--923--4231Chr11:410165..410189 (25 bp)
CCGATATGCACACGGTTATGGCGTC
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--764--6491Chr11:410163..410187 (25 bp)
GATATGCACACGGTTATGGCGTCGA
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--909--251Chr11:410162..410186 (25 bp)
ATATGCACACGGTTATGGCGTCGAC
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--619--10111Chr11:410161..410185 (25 bp)
TATGCACACGGTTATGGCGTCGACA
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--582--651Chr11:410160..410184 (25 bp)
ATGCACACGGTTATGGCGTCGACAA
LOC_Os11g01770
OsAffx.18628.1.S1_x_at--393--1911Chr11:410154..410178 (25 bp)
ACGGTTATGGCGTCGACAAGCTCGT
LOC_Os11g01770
Target Sequence 
TTCTTCAGGCCAGCGGCGGGCGAGCTCGGCGGCGGCAAGGAGGCTGGCACGACGACGTCGCGCGTCACCGATATGCACAC
GGTTATGGCGTCGACAAGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18628.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis