Browse Element(s) Details


OsAffx.30769.1.S1_at

Description tigr:9639.m00076
TID=OsAffx.30769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0175011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein
LOC_Os11g01730Os.56166.1.S1_at2/1111+391254..395763laccase, putative
LOC_Os11g01740Os.12549.1.S1_s_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.6829.1.S1_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.12549.1.S1_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740OsAffx.31542.1.S1_x_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01750OsAffx.30769.1.S1_at11/1111+401578..404374hypothetical protein
LOC_Os11g01760NANA11+407138..407431hypothetical protein
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30769.1.S1_at--549--8331Chr11:402378..402726 (25 bp)
GGCTGACGCGCATGATAACACCTTA
LOC_Os11g01750
OsAffx.30769.1.S1_at--590--8931Chr11:402375..402723 (25 bp)
TGACGCGCATGATAACACCTTACTT
LOC_Os11g01750
OsAffx.30769.1.S1_at--16--3991Chr11:402342..402366 (25 bp)
CGGGTGCTCTAAGGCTGATGCGTTC
LOC_Os11g01750
OsAffx.30769.1.S1_at--532--7311Chr11:402339..402363 (25 bp)
GTGCTCTAAGGCTGATGCGTTCTGG
LOC_Os11g01750
OsAffx.30769.1.S1_at--1--2251Chr11:402279..402303 (25 bp)
AAATTGAGTCCATTTATTCAGGAGA
LOC_Os11g01750
OsAffx.30769.1.S1_at--305--4331Chr11:402270..402294 (25 bp)
CCATTTATTCAGGAGATACCGGAAG
LOC_Os11g01750
OsAffx.30769.1.S1_at--451--10411Chr11:401723..402013 (25 bp)
TTATTTCCCGGCATACAGGCCACAA
LOC_Os11g01750
OsAffx.30769.1.S1_at--768--10651Chr11:401814..402009 (25 bp)
TTCCCGGCATACAGGCCACAAATTG
LOC_Os11g01750
OsAffx.30769.1.S1_at--145--1691Chr11:401771..401795 (25 bp)
ACCAAGTAAGCAGGGTCTGGGAGCT
LOC_Os11g01750
OsAffx.30769.1.S1_at--498--4251Chr11:401622..401646 (25 bp)
CCGGCAATCAACAACTACATCCTGA
LOC_Os11g01750
OsAffx.30769.1.S1_at--962--3711Chr11:401608..401632 (25 bp)
CTACATCCTGAGCAGGCTCGAACGG
LOC_Os11g01750
Target Sequence 
GGCTGACGCGCATGATAACACCTTACTTTACCATTGCGGGTGCTCTAAGGCTGATGCGTTCTGGCAATACTGCTGCTGCA
ATGCGCTATTATCATGACAAAATTGAGTCCATTTATTCAGGAGATACCGGAAGTGCCTTTGTCAACGGTGGTGTTTTGAA
AGAAATCCGGGATTGGGTTAATGCAAAGAGAGATACTCCATTGGGAGAAGATGAAGCTACGACCCATATGGAGAACACCT
GCCATGCGATCCATGACTATTTGAAGCTTTATTTCCCGGCATACAGGCCACAAATTGGGGGAAAGGTTAGAGGTCACCAA
GTAAGCAGGGTCTGGGAGCTTGGGGAGAGGCTTGGAAAAGATGACGGCCGCTGCTTAGCGTGCCACAAGAGAGTTAAGGG
GTTCAATGTGACCAAACTCCAGAATCACCTGCAAGGATCGGTTAAAAGGCAAGGAATACAATGCCCGGCAATCAACAACT
ACATCCTGAGCAGGCTCGAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis