Browse Element(s) Details


OsAffx.22892.1.S1_at

Description gb:NM_183757.1
DB_XREF= gi:34894641
GEN=P0028G04.21
TID=OsAffx.22892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0028G04.21 (P0028G04.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g017101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein
LOC_Os11g01730Os.56166.1.S1_at2/1111+391254..395763laccase, putative
LOC_Os11g01740Os.12549.1.S1_s_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.6829.1.S1_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.12549.1.S1_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740OsAffx.31542.1.S1_x_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01750OsAffx.30769.1.S1_at11/1111+401578..404374hypothetical protein
LOC_Os11g01760NANA11+407138..407431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22892.1.S1_at--936--1231NONE
AGATATCAAGAACAACCCTCGCTCC
NONE
OsAffx.22892.1.S1_at--515--4251Chr01:12063199..12063223 (25 bp)
CCGTGTCGCCGTTGGAGAGCTCGTT
NONE
OsAffx.22892.1.S1_at--1048--6591Chr01:12063189..12063213 (25 bp)
GTTGGAGAGCTCGTTGACCCCTTCC
NONE
OsAffx.22892.1.S1_at--1039--5891Chr01:12063113..12063137 (25 bp)
GAGCTTGCCTCGACCACCGGCGTTG
NONE
OsAffx.22892.1.S1_at--307--6671Chr01:12063092..12063116 (25 bp)
GTTGCAGCCCTCGTTGGCACGAGAG
NONE
OsAffx.22892.1.S1_at--334--6611Chr01:12063080..12063104 (25 bp)
GTTGGCACGAGAGACCGCCAGATCT
NONE
OsAffx.22892.1.S1_at--743--6011Chr01:12063072..12063096 (25 bp)
GAGAGACCGCCAGATCTGTGCGGCA
NONE
OsAffx.22892.1.S1_at--1070--5851Chr01:12062989..12063013 (25 bp)
GAGCCTGAGGACACCGTCATTCGCT
NONE
OsAffx.22892.1.S1_at--950--9591Chr01:12062973..12062997 (25 bp)
TCATTCGCTGCTTCGCTTGGCGCTT
NONE
OsAffx.22892.1.S1_at--612--7411Chr01:12062822..12062846 (25 bp)
GTGTTGCCGAGCTTGCTGCACCGTT
NONE
OsAffx.22892.1.S1_at--1093--6452Chr11:383441..383821 (25 bp)
GATTCACCGGCGAGGGAGAACCACC
LOC_Os11g01710
Target Sequence 
AGATATCAAGAACAACCCTCGCTCCGTGTCGCCGTTGGAGAGCTCGTTGACCCCTTCCGGTATGCACCCCCGAGCTCCAT
CTCCGGTGCTCGAGCCGCCCACCTCATCGGAGCTTGCCTCGACCACCGGCGTTGCAGCCCTCGTTGGCACGAGAGACCGC
CAGATCTGTGCGGCACCACCGGGGAGAGAGCGGAGAGGCGATGGCGGCAGTGGGGAGGGGAGAGGTCGGAGACGAGCCTG
AGGACACCGTCATTCGCTGCTTCGCTTGGCGCTTGGCGCTCGGCTCGTGCCCGAGGACATCGTCGCCGCTCTACCGGGGG
AGCTCCGCTCGACGCTAGTCGCCGCGCCGCCAGGGGAGCTCCACTCGACGCTCATCGCCGCGTGCCGCTTACGAGCCCCC
GTGTTGCCGAGCTTGCTGCACCGTTGTCGGGGAAGCTCGATTCACCGGCGAGGGAGAACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis