Browse Element(s) Details


Os.47316.2.S1_at

Description gb:AK073061.1
DB_XREF= gi:32983084
TID=Os.47316.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021A01, full insert sequence.
FL= gb:AK073061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g016209/11Leucine Rich Repeat family protein, expressed
LOC_Os12g017008/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47316.2.S1_at--223--1711Chr11:361057..361081 (25 bp)
ACCAATGGCATGGACCTGCCGCAGT
LOC_Os11g01620
Os.47316.2.S1_at--354--7511NONE
GTGGACCAGCGAGGCGTTCGACCTC
NONE
Os.47316.2.S1_at--971--1952Chr12:420156..420180 (25 bp)
ACTGCGTGGACCAGTCGCCGTCGGT
LOC_Os12g01700
Os.47316.2.S1_at--234--7172Chr12:420175..420199 (25 bp)
GTCGGTGAGACCTGATGCCCGGGAG
LOC_Os12g01700
Os.47316.2.S1_at--52--8232Chr12:420296..420320 (25 bp)
GGCAATGAGTAGTATGCAGCAGCTG
LOC_Os12g01700
Os.47316.2.S1_at--581--3712Chr12:420375..420395 (21 bp)
CTAGAGACTAGAAACAGAGCAAGCT
LOC_Os12g01700
Os.47316.2.S1_at--346--6052Chr12:420413..420437 (25 bp)
GAGATACTCCTATATTTCATTTATG
LOC_Os12g01700
Os.47316.2.S1_at--463--3593Chr12:420491..420515 (25 bp)
CATTATTCGTCTATGTTGTTTTTGA
LOC_Os12g01700
Os.47316.2.S1_at--866--8972Chr12:420513..420537 (25 bp)
TGAAGCTTCTTGTATAGGCAAATAT
LOC_Os12g01700
Os.47316.2.S1_at--19--5272Chr12:420557..420581 (25 bp)
GAATCGCTCTATCAGAATATCAATT
LOC_Os12g01700
Os.47316.2.S1_at--248--9831NONE
TACAAATACCACAATACCTTCCTTA
NONE
Target Sequence 
ACCAATGGCATGGACCTGCCGCAGTGGGTGGCGTCCATTGTCAAGGAGGAGTGGACCAGCGAGGCGTTCGACCTCGAGCT
CATGCGCGACGGCGACAATGGGCCCGCGGGCGACGAGCTCGTGGACACGCTGAAGCTGGCGCTGCACTGCGTGGACCAGT
CGCCGTCGGTGAGACCTGATGCCCGGGAGGTGCTCCGGCAGCTCGAGCAGATCNGGCCGGGGCCGGAGGGCGGCGCCGGG
CCGAGCGANGAAGGTGGCGCAGGGCATGTGGCTGCTGCTTCTGCAGGCAATGAGTAGTATGCAGCAGCTGNGCTCTTGAG
CAGAATTTGAAGANGAAATCGAAGGAAATGAACTTGTCANTCAGCTAGAGACTAGAAACAGAGCAAGCTAGAGAGTAGAA
NCAGAGATACTCCTATATTTCATTTATGAATTCTTTGATTTATTTGAAAGCTTAGTAGTAGTAGTATTAGTAAGTGGTAG
ACATTATTCGTCTATGTTGTTTTTGAAGCTTCTTGTATAGGCAAATATTATTATTTGCAACANAACTGAATCGCTCTATC
AGAATATCAATTACAAATACCACAATACCTTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47316.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis