Browse Element(s) Details


OsAffx.6959.1.S1_x_at

Description tigr:9639.m00067
TID=OsAffx.6959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0166011/11hypothetical protein
LOC_Os12g017201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein
LOC_Os11g01730Os.56166.1.S1_at2/1111+391254..395763laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6959.1.S1_x_at--159--4191Chr11:369465..369489 (25 bp)
CCCTACCGCACGGATGGCATCGAGG
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--252--876Chr11:369490..369514 (25 bp)
ATGGCGACGGTGACAGCTCCAGAGA
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--417--8391Chr11:369492..369516 (25 bp)
GGCGACGGTGACAGCTCCAGAGACC
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--238--8351Chr11:369548..369572 (25 bp)
GGCGGTAGCTCCTGAGACCTCCCAT
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--700--9991Chr11:369553..369577 (25 bp)
TAGCTCCTGAGACCTCCCATCATGG
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--845--4171Chr11:369568..369592 (25 bp)
CCCATCATGGATCGAGGACAGAGGC
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--1060--3771Chr11:369614..369638 (25 bp)
CTCCCGTCGTAGATGGCGTCGAGTA
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--396--9311Chr11:369652..369676 (25 bp)
TCCCGAGCCCTCCAATGTGGATGAC
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--4--1952Chr12:425093..425292 (25 bp)
ACGGCGGTAGCGACAGCTCCATAGA
LOC_Os12g01720
OsAffx.6959.1.S1_x_at--872--10031Chr11:369730..369754 (25 bp)
TAGACCTCTCACTGCAGCTGGCGTT
LOC_Os11g01660
OsAffx.6959.1.S1_x_at--885--1971Chr11:369740..369764 (25 bp)
ACTGCAGCTGGCGTTGAGGACGGTG
LOC_Os11g01660
Target Sequence 
CCCTACCGCACGGATGGCATCGAGGATGGCGACGGTGACAGCTCCAGAGACCTCCCGCCGCAGATGGCGTCGAGGATGGC
GGTGGCGGTAGCTCCTGAGACCTCCCATCATGGATCGAGGACAGAGGCGGCGACGGCGGCTCTCGAGCCCTCCCGTCGTA
GATGGCGTCGAGTACGGCGGCGGCGGCTCCCGAGCCCTCCAATGTGGATGACTCCCGAGCCCTCCCGTGTGGATGGTGTC
GAGGACGGCGGTAGCGACAGCTCCATAGACCTCTCACTGCAGCTGGCGTTGAGGACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6959.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis