Browse Element(s) Details


Os.56166.1.S1_at

Description gb:AK109523.1
DB_XREF= gi:32994732
TID=Os.56166.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F06, full insert sequence.
FL= gb:AK109523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0173011/11Multicopper oxidase family protein, expressed
LOC_Os11g017302/11laccase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01680OsAffx.25952.3.S1_at9/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_s_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_x_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01690OsAffx.31541.1.S1_s_at1/1112+413959..414621PRA1 family protein
LOC_Os12g01700Os.47316.2.S1_at8/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01700Os.47316.1.S1_at2/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01710OsAffx.18625.4.S1_x_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.5.S1_s_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.4.S1_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_x_at6/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_at2/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.5875.1.S1_at1/1112+421126..424359hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_x_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.6959.1.S1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.30274.1.A1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01750OsAffx.19447.1.S1_x_at11/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01750OsAffx.19447.1.S1_at9/1112+456260..456577Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56166.1.S1_at--408--7291Chr12:437084..437108 (25 bp)
GTGCCGGGCACCAAGGTGTACAAGC
LOC_Os12g01730
Os.56166.1.S1_at--365--10831Chr12:437219..437243 (25 bp)
TTGGGCAACTTCGATGCCGGCGCCG
LOC_Os12g01730
Os.56166.1.S1_at--761--10511Chr12:437255..437279 (25 bp)
TTCAACATGGAGGATCCGCCGATGA
LOC_Os12g01730
Os.56166.1.S1_at--1062--8352Chr12:437311..437335 (25 bp)
GGCGGTGATACGGTTCGTGGCGGAC
LOC_Os12g01730
Os.56166.1.S1_at--271--8872Chr12:437352..437376 (25 bp)
TGATGCACTGCCATCTCGACGTGCA
LOC_Os12g01730
Os.56166.1.S1_at--689--9071Chr12:437468..437492 (25 bp)
TGCTAGTGCCTCCATCAACACATCA
LOC_Os12g01730
Os.56166.1.S1_at--396--2092Chr12:437487..437511 (25 bp)
ACATCAAATTAATCACCTCTTGTGT
LOC_Os12g01730
Os.56166.1.S1_at--988--9671Chr12:437499..437523 (25 bp)
TCACCTCTTGTGTTACTGTTAGCAG
LOC_Os12g01730
Os.56166.1.S1_at--985--3611Chr12:437505..437529 (25 bp)
CTTGTGTTACTGTTAGCAGCTGATT
LOC_Os12g01730
Os.56166.1.S1_at--313--8792Chr12:437515..437539 (25 bp)
TGTTAGCAGCTGATTAATCATTTGG
LOC_Os12g01730
Os.56166.1.S1_at--319--431Chr12:437531..437555 (25 bp)
ATCATTTGGAGATCAGCATTACTGA
LOC_Os12g01730
Target Sequence 
GTGCCGGGCACCAAGGTGTACAAGCTCAAGTACGGCTCCGCCGTGCAGGTGGTGCTCCAGGGCACCAACATCTTCGCCGG
CGAGAACCACCCCATCCACCTCCACGGCTACGACTTCTACATCCTCGCCGAGGGGTTGGGCAACTTCGATGCCGGCGCCG
ACACGGCCAAGTTCAACATGGAGGATCCGCCGATGAGGAACACGGTGGGCGTGCCGGTGAACGGGTGGGCGGTGATACGG
TTCGTGGCGGACAACCCGGGGGTGTGGCTGATGCACTGCCATCTCGACGTGCACATCACCTGGGGCCTCGCCATGGCCTT
CCTCGTCGACGACGGCGTCGGCGAGCTGCAGTCGCTGGAGGCGCCTCCACCTGACCTGCCACTCTGCTAGTGCCTCCATC
AACACATCAAATTAATCACCTCTTGTGTTACTGTTAGCAGCTGATTAATCATTTGGAGATCAGCATTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis