Browse Element(s) Details


Os.47316.1.S1_at

Description gb:AK109643.1
DB_XREF= gi:32994852
TID=Os.47316.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-G09, full insert sequence.
FL= gb:AK109643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0162011/11Leucine Rich Repeat family protein, expressed
LOC_Os12g017002/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47316.1.S1_at--200--1231Chr11:360096..360120 (25 bp)
AGTTCCTCCACGGTCAATACTCTGT
LOC_Os11g01620
Os.47316.1.S1_at--721--9211Chr11:360102..360126 (25 bp)
TCCACGGTCAATACTCTGTCAATGC
LOC_Os11g01620
Os.47316.1.S1_at--616--9911Chr11:360113..360137 (25 bp)
TACTCTGTCAATGCTACTCTTCTTA
LOC_Os11g01620
Os.47316.1.S1_at--1009--7071Chr11:360119..360143 (25 bp)
GTCAATGCTACTCTTCTTATCTTAT
LOC_Os11g01620
Os.47316.1.S1_at--593--4851Chr11:360125..360149 (25 bp)
GCTACTCTTCTTATCTTATGCATTT
LOC_Os11g01620
Os.47316.1.S1_at--498--3671Chr11:360139..360163 (25 bp)
CTTATGCATTTGATCTTCATCCTAT
LOC_Os11g01620
Os.47316.1.S1_at--1160--6391Chr11:360150..360174 (25 bp)
GATCTTCATCCTATTAATTAGGAAG
LOC_Os11g01620
Os.47316.1.S1_at--841--1951Chr11:360191..360215 (25 bp)
ACTGTATGCATTCTTCAGCTTTTAC
LOC_Os11g01620
Os.47316.1.S1_at--71--4951Chr11:360198..360222 (25 bp)
GCATTCTTCAGCTTTTACTTCTGCT
LOC_Os11g01620
Os.47316.1.S1_at--231--4892Chr12:419168..419192 (25 bp)
GCTTTTACTTCTGCTTTCAACTGAA
LOC_Os12g01700
Os.47316.1.S1_at--195--4892Chr12:419180..419204 (25 bp)
GCTTTCAACTGAAACTACTCTGAAC
LOC_Os12g01700
Target Sequence 
AGTTCCTCCACGGTCAATACTCTGTCAATGCTACTCTTCTTATCTTATGCATTTGATCTTCATCCTATTAATTAGGAAGA
CAATGCAATTGATAAACTGTATGCATTCTTCAGCTTTTACTTCTGCTTTCAACTGAAACTACTCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis