Browse Element(s) Details


Os.6829.1.S1_at

Description gb:AK073774.1
DB_XREF= gi:32983797
TID=Os.6829.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068C19, full insert sequence.
FL= gb:AK073774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0174011/11Protein kinase domain containing protein, expressed
LOC_Os11g0174011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01690OsAffx.31541.1.S1_s_at1/1112+413959..414621PRA1 family protein
LOC_Os12g01700Os.47316.2.S1_at8/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01700Os.47316.1.S1_at2/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01710OsAffx.18625.4.S1_x_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.5.S1_s_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.4.S1_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_x_at6/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_at2/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.5875.1.S1_at1/1112+421126..424359hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_x_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.6959.1.S1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.30274.1.A1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01750OsAffx.19447.1.S1_x_at11/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01750OsAffx.19447.1.S1_at9/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01760Os.46305.1.S1_at11/1112+463699..467349Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6829.1.S1_at--1129--5332Chr12:438479..438503 (25 bp)
GAAGTTATGGAGTTACCTGCGATGC
LOC_Os12g01740
Os.6829.1.S1_at--701--1212Chr12:438469..438493 (25 bp)
AGTTACCTGCGATGCTCTCAATACA
LOC_Os12g01740
Os.6829.1.S1_at--388--4632Chr12:438461..438485 (25 bp)
GCGATGCTCTCAATACATAATGAAT
LOC_Os12g01740
Os.6829.1.S1_at--1010--7052Chr12:438434..438458 (25 bp)
GTCAATTGTTTTGTTTCTCTTTTAT
LOC_Os12g01740
Os.6829.1.S1_at--152--10812Chr12:438424..438448 (25 bp)
TTGTTTCTCTTTTATTATTTCTCTT
LOC_Os12g01740
Os.6829.1.S1_at--731--10553Chr12:534302..534326 (25 bp)
TTCTTGAAACATGTACAGTGCTGGT
NONE
Os.6829.1.S1_at--880--3453Chr12:534317..534341 (25 bp)
CAGTGCTGGTGTGTGATACATGTAC
NONE
Os.6829.1.S1_at--872--332Chr12:438299..438323 (25 bp)
ATACATGTACAGTAGTTTGTGTGTG
LOC_Os12g01740
Os.6829.1.S1_at--974--272Chr12:438270..438294 (25 bp)
ATAGTTGAAGGATGCACATGAGAGC
LOC_Os12g01740
Os.6829.1.S1_at--917--4873Chr12:534394..534413 (20 bp)
GCTATTATTTAGAAGCTAGTGGCTG
NONE
Os.6829.1.S1_at--988--10313Chr12:534451..534475 (25 bp)
TTTCATATTTTCTGTATACTCTAAG
NONE
Target Sequence 
GAAGTTATGGAGTTACCTGCGATGCTCTCAATACATAATGAATTGGTCAATTGTTTTGTTTCTCTTTTATTATTTCTCTT
NACCTGATCAATTTTTTTGTTCCCTGGGAGGCTGGGGGAGCGGCCATTGCNGTTACACATATTTGTATATTTCTTGAAAC
ATGTACAGTGCTGGTGTGTGATACATGTACAGTAGTTTGTGTGTGATAGATAGTTGAAGGATGCACATGAGAGCATAAAA
GCTATTATTTAGAAGCTAGTGGCTGGTATGGTTGCTGGTGTGAGNAAGTGCATGAAGAAACCAATGAAATAACTTTTTCA
TATTTTCTGTATACTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis