Browse Element(s) Details


OsAffx.30771.1.S1_at

Description tigr:9639.m00082
TID=OsAffx.30771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0181011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01750OsAffx.30769.1.S1_at11/1111+401578..404374hypothetical protein
LOC_Os11g01760NANA11+407138..407431hypothetical protein
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0005634cellular_componentnucleus
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008170molecular_functionN-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30771.1.S1_at--521--7631Chr11:430553..430577 (25 bp)
GGGACATATTCCCTAATGGCATGAA
LOC_Os11g01810
OsAffx.30771.1.S1_at--332--2972Chr12:485753..485777 (25 bp)
AATGGCATGAACGTCTTGTCCTTGT
NONE
OsAffx.30771.1.S1_at--540--1872Chr12:485763..485787 (25 bp)
ACGTCTTGTCCTTGTTTTCTGGTAT
NONE
OsAffx.30771.1.S1_at--1087--2831Chr11:430613..430637 (25 bp)
AAGTAGCTCTCCACAGGCTTGGAAT
LOC_Os11g01810
OsAffx.30771.1.S1_at--159--5152Chr12:486012..486036 (25 bp)
GCAACAACCTCGCTGGTAGCAACAG
NONE
OsAffx.30771.1.S1_at--921--6952Chr12:486027..486051 (25 bp)
GTAGCAACAGATACCACCGTGATGG
NONE
OsAffx.30771.1.S1_at--78--9992Chr12:486038..486062 (25 bp)
TACCACCGTGATGGCTTGGAGGGCA
NONE
OsAffx.30771.1.S1_at--543--8552Chr12:486054..486078 (25 bp)
TGGAGGGCAAGCACTCAGCACTATT
NONE
OsAffx.30771.1.S1_at--742--1492Chr12:486070..486094 (25 bp)
AGCACTATTCTATCACTACTACAGA
NONE
OsAffx.30771.1.S1_at--583--9351Chr11:431495..431519 (25 bp)
TCGCAAGGCCCTTCTGTTGAAACAA
LOC_Os11g01810
OsAffx.30771.1.S1_at--779--8811Chr11:431509..431533 (25 bp)
TGTTGAAACAATCCTCCTCCTTGAC
LOC_Os11g01810
Target Sequence 
GGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTT
GGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGAC
CCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTG
GTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAG
GGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTCTGTAAAGACTATTATGGCTAGCATTTTTGGTGC
GAAAGGAAAGTTGTTTCGCCATGTTCGCAAGGCCCTTCTGTTGAAACAATCCTCCTCCTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis