Browse Element(s) Details

OsAffx.31545.2.S1_at

Description

tigr:9640.m00090
TID=OsAffx.31545.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized Cys-rich domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g01890	11/11	hypothetical protein
LOC_Os11g01842	4/11	Protein of unknown function, DUF614 containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g01830	Os.16506.1.A1_at	11/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01830	Os.51492.1.S1_at	1/11	12	+	493933..498310	nuclease, putative, expressed
LOC_Os12g01850	Os.54332.1.S1_at	11/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.31545.1.S1_x_at	6/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01850	OsAffx.19826.2.S1_at	1/11	12	+	498850..502128	pentatricopeptide, putative, expressed
LOC_Os12g01860	NA	NA	12	+	503097..506429	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.47463.1.S1_x_at	6/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870	Os.14491.2.S1_x_at	5/11	12	+	507740..512526	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880	Os.55160.1.S1_at	11/11	12	+	514426..516055	expressed protein
LOC_Os12g01890	OsAffx.31545.2.S1_x_at	11/11	12	+	520227..521682	hypothetical protein
LOC_Os12g01890	OsAffx.31545.2.S1_at	11/11	12	+	520227..521682	hypothetical protein
LOC_Os12g01900	Os.50793.1.S1_x_at	10/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	Os.50793.1.S1_at	7/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	Os.27583.1.S1_at	2/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	OsAffx.31930.1.S1_at	1/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900	OsAffx.31930.1.S1_x_at	1/11	12	+	523318..529565	retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910	OsAffx.18630.1.S1_at	8/11	12	+	530180..534127	pentatricopeptide, putative
LOC_Os12g01910	OsAffx.31542.1.S1_x_at	7/11	12	+	530180..534127	pentatricopeptide, putative
LOC_Os12g01916	Os.51834.1.S1_at	11/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	Os.3740.1.S1_x_at	11/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	OsAffx.30773.1.S1_x_at	11/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	OsAffx.30773.2.S1_x_at	7/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916	OsAffx.30773.3.S1_x_at	5/11	12	+	534941..539341	Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922	Os.3740.3.S1_s_at	10/11	12	+	540268..549495	transducin family protein, putative, expressed
LOC_Os12g01922	Os.3740.4.S1_at	6/11	12	+	540268..549495	transducin family protein, putative, expressed
LOC_Os12g01922	Os.3740.3.S1_at	2/11	12	+	540268..549495	transducin family protein, putative, expressed
LOC_Os12g01922	OsAffx.30773.3.S1_x_at	2/11	12	+	540268..549495	transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006950	biological_process	response to stress
GO:0007568	biological_process	aging
GO:0009621	biological_process	response to pathogenic fungi

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.31545.2.S1_at--855--407	1	Chr12:520879..520903 (25 bp)	CGAGAACGTGAAATCGCAGGTCGAC	LOC_Os12g01890
OsAffx.31545.2.S1_at--500--481	2	Chr12:520514..520704 (25 bp)	GCTCGGCAACATATGCGGAGGCGCT	LOC_Os12g01890
OsAffx.31545.2.S1_at--781--943	2	Chr12:520512..520702 (25 bp)	TCGGCAACATATGCGGAGGCGCTTC	LOC_Os12g01890
OsAffx.31545.2.S1_at--272--803	1	Chr12:520392..520416 (25 bp)	GGAGGTGAGGACGACCAACCTGTAC	LOC_Os12g01890
OsAffx.31545.2.S1_at--811--887	1	Chr12:520387..520411 (25 bp)	TGAGGACGACCAACCTGTACGACGT	LOC_Os12g01890
OsAffx.31545.2.S1_at--584--577	2	Chr12:520383..520407 (25 bp)	GACGACCAACCTGTACGACGTGGAG	LOC_Os12g01890
OsAffx.31545.2.S1_at--639--437	2	Chr12:520378..520402 (25 bp)	CCAACCTGTACGACGTGGAGGAGGA	LOC_Os12g01890
OsAffx.31545.2.S1_at--283--463	1	Chr12:520310..520334 (25 bp)	GCGATGGCGCCTTTGGAGAGAGAAG	LOC_Os12g01890
OsAffx.31545.2.S1_at--420--61	1	Chr12:520267..520291 (25 bp)	ATGCGCCGCCGCTACCGATGAGAAT	LOC_Os12g01890
OsAffx.31545.2.S1_at--255--453	1	Chr12:520263..520287 (25 bp)	GCCGCCGCTACCGATGAGAATCGAA	LOC_Os12g01890
OsAffx.31545.2.S1_at--75--453	1	Chr12:520260..520284 (25 bp)	GCCGCTACCGATGAGAATCGAAGAG	LOC_Os12g01890

Target Sequence

CGAGAACGTGAAATCGCAGGTCGACGAGGCCAACGCGATCGCGGTGACGGCGCAGTGTGACAGCAACAGAAACAGGGCGG
TGGTCGCGAAGCCGGAGTGGGCCGGCGGGCTGTTCGACGTCGGCGACGACCCGACGGTGGCGCGCGCTGTCGCTGTCGTG
CACGTTCTGCGTGTTCGGGTGGAACATGGAGCGCCTGGGGCTCGGCAACATATGCGGAGGCGCTTCGGGCTGCCGGCGCA
CCACTGGTCCATGTGCGGCGGGCGGGCAACGGCGGCGGACTACGGCAAGTGGCTGTGCTGCGCGCCGTGCGCGCTGGCGC
AGGAGGTGAGGACGACCAACCTGTACGACGTGGAGGAGGACGTGCTGTACGCCAAAGGTGGCGAGGAGGAGGAGGAGGAG
GCGGCGATGGCGCCTTTGGAGAGAGAAGGCTGCATCGTCGCCGTTGATGCGCCGCCGCTACCGATGAGAATCGAAGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis