Browse Element(s) Details


OsAffx.31545.1.S1_x_at

Description tigr:9639.m00085
TID=OsAffx.31545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0183611/11vegetative storage protein, putative
LOC_Os12g018506/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31545.1.S1_x_at--525--9032Chr12:499867..499891 (25 bp)
TGCACTTCTTGGTGGCTGCAAGATT
LOC_Os12g01850
OsAffx.31545.1.S1_x_at--588--131Chr11:445545..445569 (25 bp)
ATTCACCGAAACACGGAGCTTGCTG
LOC_Os11g01836
OsAffx.31545.1.S1_x_at--411--10271Chr11:445513..445537 (25 bp)
TTTGAAGCAGCTCATTCTACTGGAG
LOC_Os11g01836
OsAffx.31545.1.S1_x_at--247--1952Chr12:499795..499819 (25 bp)
ACTGGAGCCCTGGAATTCTGGGAAC
LOC_Os12g01850
OsAffx.31545.1.S1_x_at--961--7212Chr12:499686..499710 (25 bp)
GTCGAGAAGGTTCCTGCATGCAGCT
LOC_Os12g01850
OsAffx.31545.1.S1_x_at--356--7831Chr11:445347..445371 (25 bp)
GGTAAGGTCCATGAATTCCGTGTCG
LOC_Os11g01836
OsAffx.31545.1.S1_x_at--197--10652Chr12:499637..499656 (20 bp)
TTCCGTGTCGGAGACAAGTCGCATC
LOC_Os12g01850
OsAffx.31545.1.S1_x_at--36--1151Chr11:445316..445340 (25 bp)
AGTCGCATCCTCTTTCAGATCAGAT
LOC_Os11g01836
OsAffx.31545.1.S1_x_at--683--4951Chr11:445155..445179 (25 bp)
GCATTTAACCTTCTCATCACTGGAC
LOC_Os11g01836
OsAffx.31545.1.S1_x_at--568--1052Chr12:499416..499440 (25 bp)
AGGGTCACCAAGAACCTCAGAGTTT
LOC_Os12g01850
OsAffx.31545.1.S1_x_at--930--5693Chr12:499387..499410 (24 bp)
GACTGTCACACTGCAATTAAACTCG
LOC_Os12g01850
Target Sequence 
TGCACTTCTTGGTGGCTGCAAGATTCACCGAAACACGGAGCTTGCTGAACATGTTTTGAAGCAGCTCATTCTACTGGAGC
CCTGGAATTCTGGGAACTATGTAATGCTCTCCAACATATACTCTAACAGAGGCAGATGGGAGGATGCAGCGAAGCTTAGA
TTGGACATGAAAGCAAAAGGGGTCGAGAAGGTTCCTGCATGCAGCTGGGTTGAGTTTGAAGGTAAGGTCCATGAATTCCG
TGTCGGAGACAAGTCGCATCCTCTTTCAGATCAGATTTACAAAAAGCTCGACGAATTAGGATTGGAAATGAAAACCATGG
GTTATGAACCAACAACAGAAGTGGTGATGTTTGATGTTGAAGATGAAGAGAAGGAGCACACACTAGTGCATCATAGTGAG
AAACTAGCAATTGCATTTAACCTTCTCATCACTGGACCAGGGGAGACCATTAGGGTCACCAAGAACCTCAGAGTTTGCAG
TGACTGTCACACTGCAATTAAACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31545.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis