Browse Element(s) Details


Os.50793.1.S1_x_at

Description gb:AK058609.1
DB_XREF= gi:32968627
TID=Os.50793.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A07, full insert sequence.
FL= gb:AK058609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0190010/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g018504/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01850Os.54332.1.S1_at11/1112+498850..502128pentatricopeptide, putative, expressed
LOC_Os12g01850OsAffx.31545.1.S1_x_at6/1112+498850..502128pentatricopeptide, putative, expressed
LOC_Os12g01850OsAffx.19826.2.S1_at1/1112+498850..502128pentatricopeptide, putative, expressed
LOC_Os12g01860NANA12+503097..506429transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.47463.1.S1_x_at6/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.14491.2.S1_x_at5/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880Os.55160.1.S1_at11/1112+514426..516055expressed protein
LOC_Os12g01890OsAffx.31545.2.S1_x_at11/1112+520227..521682hypothetical protein
LOC_Os12g01890OsAffx.31545.2.S1_at11/1112+520227..521682hypothetical protein
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910OsAffx.18630.1.S1_at8/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01910OsAffx.31542.1.S1_x_at7/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01916Os.51834.1.S1_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916Os.3740.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.2.S1_x_at7/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.3.S1_x_at5/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50793.1.S1_x_at--745--692Chr12:523637..523661 (25 bp)
ATGTCCAATTCCATGAACCACCGGA
LOC_Os12g01900
Os.50793.1.S1_x_at--133--8992Chr12:523624..523648 (25 bp)
TGAACCACCGGACACGATGATCATG
LOC_Os12g01900
Os.50793.1.S1_x_at--659--9611Chr12:523604..523628 (25 bp)
TCATGGCAACATCAGAGGAATCAAG
LOC_Os12g01900
Os.50793.1.S1_x_at--34--3231Chr12:523583..523607 (25 bp)
CAAGTGATCATGTCGTGGTTGTTCA
LOC_Os12g01900
Os.50793.1.S1_x_at--453--2811Chr12:523461..523485 (25 bp)
AAGATCATGGGTTTGCCTCTTCCGG
LOC_Os12g01900
Os.50793.1.S1_x_at--245--10691Chr12:523449..523473 (25 bp)
TTGCCTCTTCCGGAATCAGTGATTG
LOC_Os12g01900
Os.50793.1.S1_x_at--651--1091Chr12:523432..523456 (25 bp)
AGTGATTGTGGTTGATGCTGAGATA
LOC_Os12g01900
Os.50793.1.S1_x_at--453--6491Chr12:523411..523435 (25 bp)
GATACCGGCCAGTTTGTCTGATGGA
LOC_Os12g01900
Os.50793.1.S1_x_at--647--2992Chr12:523353..523377 (25 bp)
AATGTTGTCACTTTGGTTTCTTTGC
LOC_Os12g01900
Os.50793.1.S1_x_at--1029--6832Chr12:523338..523362 (25 bp)
GTTTCTTTGCTCATTCTTCTCTACA
LOC_Os12g01900
Os.50793.1.S1_x_at--618--9511Chr12:523065..523089 (25 bp)
TCTCTAATGCAGTTATACTTCCTCC
NONE
Target Sequence 
ATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAACATCAGAGGAATCAAGTGATCATGTCGTGGTTGTTCAT
NGNGGANATGGTTCCACCGGNCTGTGCAGNTTGTNTTTGAGCAAGTCGTCNTTGNAGGTGATNAATCTGAAGAAGAATGC
AGTGCAGTTCATGATGAGAAGATCATGGGTTTGCCTCTTCCGGAATCAGTGATTGTGGTTGATGCTGAGATACCGGCCAG
TTTGTCTGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATGAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTC
TCTACACCAGGGGATTCATTCGTTAGTGAGGCACAGAAAATGCNTAAAAAAAGGGTACAGATTCAATAGCTAGATGACTG
AATTCTCTCATCTTTCTCCATTACTTTNNGTTGGTTCTGATCGAGAGGAAATTCATTCTTTGCAGTTNGGGTGTACATAG
GTATACATGATGGCATAAAGATGCCNCATGATTAANANGGGCTTGCGTATNTGTAATCCATNCCGAGCTGTAATNGCAGC
TNGGNANTAGTGAATCTCTAATGCAGTTATACTTCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50793.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis