Browse Element(s) Details


OsAffx.6960.1.S1_s_at

Description tigr:9639.m00090
TID=OsAffx.6960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0188011/11hypothetical protein
LOC_Os12g0193011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01880OsAffx.6960.1.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_x_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_s_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_x_at10/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.1.S1_at2/1111+476028..483647hypothetical protein
LOC_Os11g01890Os.9846.1.S1_x_at11/1111+483798..486696expressed protein
LOC_Os11g01890Os.9846.2.S1_at10/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.1.S1_at2/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.2.S1_x_at1/1111+483798..486696expressed protein
LOC_Os11g01900OsAffx.30774.1.S1_s_at11/1111+487827..488893hypothetical protein
LOC_Os11g01910NANA11+489197..489939hypothetical protein
LOC_Os11g01920NANA11+492407..498499retrotransposon protein, putative, unclassified
LOC_Os11g01930NANA11+499177..501200retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6960.1.S1_s_at--934--4752Chr12:554769..554793 (25 bp)
GCTGCAGCTGATGGGAATCCTACTA
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--953--3372Chr12:554765..554789 (25 bp)
CAGCTGATGGGAATCCTACTAGGAT
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--466--6252Chr12:554760..554784 (25 bp)
GATGGGAATCCTACTAGGATCCCAG
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--98--5272Chr12:554755..554779 (25 bp)
GAATCCTACTAGGATCCCAGTTGTA
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--306--572Chr12:554753..554777 (25 bp)
ATCCTACTAGGATCCCAGTTGTAAT
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--738--9252Chr12:554749..554773 (25 bp)
TACTAGGATCCCAGTTGTAATGCCA
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--16--10092Chr12:554746..554770 (25 bp)
TAGGATCCCAGTTGTAATGCCACTT
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--322--7952Chr12:554744..554768 (25 bp)
GGATCCCAGTTGTAATGCCACTTTC
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--35--552Chr12:554742..554766 (25 bp)
ATCCCAGTTGTAATGCCACTTTCAG
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--380--4172Chr12:554740..554764 (25 bp)
CCCAGTTGTAATGCCACTTTCAGCT
LOC_Os12g01930
OsAffx.6960.1.S1_s_at--1059--6632Chr12:554736..554760 (25 bp)
GTTGTAATGCCACTTTCAGCTGCAA
LOC_Os12g01930
Target Sequence 
GCTGCAGCTGATGGGAATCCTACTAGGATCCCAGTTGTAATGCCACTTTCAGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6960.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis