Browse Element(s) Details


Os.9846.1.S1_x_at

Description gb:AK060105.1
DB_XREF= gi:32970123
TID=Os.9846.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B06, full insert sequence.
FL= gb:AK060105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0189011/11expressed protein
LOC_Os12g019507/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01880OsAffx.6960.1.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_x_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_s_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_x_at10/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.1.S1_at2/1111+476028..483647hypothetical protein
LOC_Os11g01890Os.9846.1.S1_x_at11/1111+483798..486696expressed protein
LOC_Os11g01890Os.9846.2.S1_at10/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.1.S1_at2/1111+483798..486696expressed protein
LOC_Os11g01890OsAffx.9909.2.S1_x_at1/1111+483798..486696expressed protein
LOC_Os11g01900OsAffx.30774.1.S1_s_at11/1111+487827..488893hypothetical protein
LOC_Os11g01910NANA11+489197..489939hypothetical protein
LOC_Os11g01920NANA11+492407..498499retrotransposon protein, putative, unclassified
LOC_Os11g01930NANA11+499177..501200retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9846.1.S1_x_at--246--6632Chr12:563738..564103 (25 bp)
GTTGTGGTTAGTGTCCCTGAAGGAA
LOC_Os12g01950
Os.9846.1.S1_x_at--996--5572Chr12:564119..564143 (25 bp)
GAAATGACTTGCTACTCATACGAGA
LOC_Os12g01950
Os.9846.1.S1_x_at--904--6292Chr12:564268..564292 (25 bp)
GATGATGCGACCACTGTGATCCAAA
LOC_Os12g01950
Os.9846.1.S1_x_at--442--2732Chr12:564328..564352 (25 bp)
AAGCACTTTAGGAAGCTCCGCGACT
LOC_Os12g01950
Os.9846.1.S1_x_at--698--9291Chr11:486237..486261 (25 bp)
TCCGCGACTTTGACTACTCGAATTG
LOC_Os11g01890
Os.9846.1.S1_x_at--980--10392Chr12:564412..564436 (25 bp)
TTTTGCTAATTTTGCAGCTGCTTAT
LOC_Os12g01950
Os.9846.1.S1_x_at--8--832Chr12:564453..564477 (25 bp)
ATGGACCATGGTGCTCAAGGGAGAA
LOC_Os12g01950
Os.9846.1.S1_x_at--883--5252Chr12:564475..564499 (25 bp)
GAATCGCCATCTTCGAGTAGGCTAA
LOC_Os12g01950
Os.9846.1.S1_x_at--340--3351Chr11:486434..486458 (25 bp)
CACGTAGCGAGCCTATCTGTACAAA
LOC_Os11g01890
Os.9846.1.S1_x_at--579--10831Chr11:486476..486500 (25 bp)
TTGTGAATGCACTACCTTGATGGGT
LOC_Os11g01890
Os.9846.1.S1_x_at--998--4571Chr11:486502..486526 (25 bp)
GCGAACGAATATGTGGTCCTTGGAT
LOC_Os11g01890
Target Sequence 
GTTGTGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATT
CAGAATAATTGACAAGACCAAAAGGGATGATGCGACCACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATG
TGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCA
GAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCC
ATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTAC
AAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9846.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis