Browse Element(s) Details


OsAffx.30774.1.S1_s_at

Description tigr:9639.m00847
TID=OsAffx.30774.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1580011/11hypothetical protein
LOC_Os03g0709011/11hypothetical protein
LOC_Os11g0190011/11hypothetical protein
LOC_Os10g0321011/11hypothetical protein
LOC_Os11g0899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15760Os.11631.1.S1_at11/116+8954692..8958656Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein
LOC_Os06g15800OsAffx.30774.2.S1_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15800OsAffx.30774.1.S1_s_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15810Os.50766.1.S1_at11/116+8973515..8975734expressed protein
LOC_Os06g15820Os.50610.1.S1_at11/116+8976348..8980634NHL repeat-containing protein, putative, expressed
LOC_Os06g15830OsAffx.27658.2.S1_at11/116+8985169..8985819hypothetical protein
LOC_Os06g15840NANA6+8991764..8995096transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30774.1.S1_s_at--589--8015Chr11:4773151..4773354 (25 bp)
GGAGGTTGGCCGTCGATCACCGAAA
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--204--6615Chr11:4773155..4773358 (25 bp)
GTTGGCCGTCGATCACCGAAAAACG
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--440--8415Chr11:4773341..4773361 (21 bp)
GGCCGTCGATCACCGAAAAACGCTA
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--571--7216Chr11:4773341..4773365 (25 bp)
GTCGATCACCGAAAAACGCTATTAC
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--648--2375Chr11:4773354..4773378 (25 bp)
AAACGCTATTACTCGCCCGGGCTCA
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--571--10195Chr11:4773360..4773384 (25 bp)
TATTACTCGCCCGGGCTCAACGATG
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--909--3455Chr11:4773416..4773440 (25 bp)
CAGTGTACGACGACATCGTGGGCGC
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--1153--8735Chr11:4773419..4773443 (25 bp)
TGTACGACGACATCGTGGGCGCGTA
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--945--1855Chr11:4773422..4773446 (25 bp)
ACGACGACATCGTGGGCGCGTACCG
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--989--495Chr11:4773430..4773454 (25 bp)
ATCGTGGGCGCGTACCGCGGGTTCA
LOC_Os11g08990
OsAffx.30774.1.S1_s_at--300--1655Chr11:4773628..4773652 (25 bp)
AGCGACGACGAGTCATTCGCCGCCG
LOC_Os11g08990
Target Sequence 
GGAGGTTGGCCGTCGATCACCGAAAAACGCTATTACTCGCCCGGGCTCAACGATGCCGCTAGCTCCGCCACTGGCCGTCG
CNGGCGCAGTGTACGACGACATCGTGGGCGCGTACCGCGGGTTCATGCCGTCGCGGACGCGCGCGTTCCTCGTCATCCAC
CNTGGCCNGCTCGAGCCGCACGTCCGCTGCCCCTACTGCGGCGCCCGCGTCTGGAGCATGACCGCCGCGGGGCTCGCCCG
CCTCTCCTCCTCTTCCTCCAGCGACGGCGAGCGAAGCGCCGACTCCGACTCCAACCACAGCGACGACGAGTCATTCGCCG
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30774.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis