Browse Element(s) Details


Os.50610.1.S1_at

Description gb:AK122070.1
DB_XREF= gi:37991716
TID=Os.50610.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117I22, full insert sequence.
FL= gb:AK122070.1 gb:AK064807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1582011/11NHL repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15760Os.11631.1.S1_at11/116+8954692..8958656Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein
LOC_Os06g15800OsAffx.30774.2.S1_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15800OsAffx.30774.1.S1_s_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15810Os.50766.1.S1_at11/116+8973515..8975734expressed protein
LOC_Os06g15820Os.50610.1.S1_at11/116+8976348..8980634NHL repeat-containing protein, putative, expressed
LOC_Os06g15830OsAffx.27658.2.S1_at11/116+8985169..8985819hypothetical protein
LOC_Os06g15840NANA6+8991764..8995096transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15850Os.47463.1.S1_x_at6/116+8998301..9003291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15850Os.14491.2.S1_x_at5/116+8998301..9003291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15860NANA6+9005420..9006844hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50610.1.S1_at--946--1511Chr06:8976858..8976882 (25 bp)
AGCAGCACAGGCAGTACTCCGCAGG
LOC_Os06g15820
Os.50610.1.S1_at--97--871Chr06:8976836..8976860 (25 bp)
AGGCCCGCAAACTTTCTACGAGCAG
LOC_Os06g15820
Os.50610.1.S1_at--96--1371Chr06:8976813..8976837 (25 bp)
AGAGCTGCGAGACGACAAACGAGAT
LOC_Os06g15820
Os.50610.1.S1_at--189--531Chr06:8976687..8976711 (25 bp)
ATCGCAACAATTACATCGGCTACAA
LOC_Os06g15820
Os.50610.1.S1_at--667--10352Chr06:29767005..29767027 (23 bp)
TTTATCCCTGTTTCTTTCCTATATG
NONE
Os.50610.1.S1_at--1071--3791Chr06:8976523..8976547 (25 bp)
CTCCGCGACGCCTGTAACAAAAGAA
LOC_Os06g15820
Os.50610.1.S1_at--61--1331Chr06:8976478..8976502 (25 bp)
AGAGGCACTAATCTTCTTCAGTCCT
LOC_Os06g15820
Os.50610.1.S1_at--1152--10511Chr06:8976462..8976486 (25 bp)
TTCAGTCCTGACCTGTGCAATGCAA
LOC_Os06g15820
Os.50610.1.S1_at--799--7871Chr06:8976418..8976442 (25 bp)
GGTTTTTGTACTACACCCTGATGAT
LOC_Os06g15820
Os.50610.1.S1_at--639--6291Chr06:8976396..8976420 (25 bp)
GATGATCAGACACTCTTACACTACC
LOC_Os06g15820
Os.50610.1.S1_at--74--9571Chr06:8976383..8976407 (25 bp)
TCTTACACTACCATCCTGTACATAT
LOC_Os06g15820
Target Sequence 
AGCAGCACAGGCAGTACTCCGCAGGCCCGCAAACTTTCTACGAGCAGAGCTGCGAGACGACAAACGAGATCGTCTTNGGT
GCNGTCCAGGAGGTGGANACCAAGCGGCGAATGGTGGAGATCAAGGCCGTGAACTATGGGGACACATTCTATGAGCAGTA
CGGGATGCGNTATCGCAACAATTACATCGGCTACAACAACAGCAGCAACGGCAACAACAACAGCTACTACTATTANACAA
CCAACCCTTNTGCCCTCAATTTTCCCCCTCTCTCTTTATCCCTGTTTCTTTCCTATATGATTAGATTTACCGCTCNCGTT
TTCGCTTCTCCTGACCTCCGCGACGCCTGTAACAAAAGAAAGAAAAAGCGGGGNGGAAGTAGAGGCACTAATCTTCTTCA
GTCCTGACCTGTGCAATGCAATGGCAAACACCTGGGGAGGGGTTTTTGTACTACACCCTGATGATGATCAGACACTCTTA
CACTACCATCCTGTACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis