Browse Element(s) Details


Os.3740.4.S1_at

Description gb:AY491431.1
DB_XREF= gi:40218072
TID=Os.3740.4
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for dsRNA-binding protein ODB1, complete cds
DEF=Oryza sativa (japonica cultivar-group) transducinWD-40 repeat protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g019226/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01880Os.55160.1.S1_at11/1112+514426..516055expressed protein
LOC_Os12g01890OsAffx.31545.2.S1_x_at11/1112+520227..521682hypothetical protein
LOC_Os12g01890OsAffx.31545.2.S1_at11/1112+520227..521682hypothetical protein
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01910OsAffx.18630.1.S1_at8/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01910OsAffx.31542.1.S1_x_at7/1112+530180..534127pentatricopeptide, putative
LOC_Os12g01916Os.51834.1.S1_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916Os.3740.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.1.S1_x_at11/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.2.S1_x_at7/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01916OsAffx.30773.3.S1_x_at5/1112+534941..539341Double-stranded RNA binding motif family protein, expressed
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01960OsAffx.31546.2.S1_at11/1112+567945..569943expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3740.4.S1_at--858--10012Chr12:540429..540453 (25 bp)
TAGATGCATTTGTCCAGCTAACACA
LOC_Os12g01922
Os.3740.4.S1_at--449--5232Chr12:540387..540411 (25 bp)
GAATCAATGCCTTCTTTTAAGTCTT
LOC_Os12g01922
Os.3740.4.S1_at--891--1152Chr12:540368..540392 (25 bp)
AGTCTTTCATTGTAAGCACTGGACA
LOC_Os12g01922
Os.3740.4.S1_at--249--1132Chr12:540336..540360 (25 bp)
AGTGCATCAAGGTAGGGCGTCATTG
LOC_Os12g01922
Os.3740.4.S1_at--419--6932Chr12:540325..540349 (25 bp)
GTAGGGCGTCATTGTCCTTTTGTAT
LOC_Os12g01922
Os.3740.4.S1_at--1107--7012Chr12:540291..540315 (25 bp)
GTACTTGTACAGTTGCCCACTTTGA
LOC_Os12g01922
Os.3740.4.S1_at--1127--8412Chr12:540147..540171 (25 bp)
GGCCGGAAGCACTTTGGGTCTGTAA
NONE
Os.3740.4.S1_at--346--4732Chr12:540095..540119 (25 bp)
GCTGTGAGTGTTTTATCTTTGTGGC
NONE
Os.3740.4.S1_at--53--452Chr12:540077..540105 (25 bp)
ATCTTTGTGGCTTTGTCTGGGTCGC
NONE
Os.3740.4.S1_at--433--7231Chr11:461677..461701 (25 bp)
GTCGCCAGACAAACCAGTGACCTTT
NONE
Os.3740.4.S1_at--977--11Chr11:461529..461553 (25 bp)
ATTGGGCGTTTTCATACCGTGGAGA
NONE
Target Sequence 
TAGATGCATTTGTCCAGCTAACACANTATTANATGGCTTGATGAATCAATGCCTTCTTTTAAGTCTTTCATTGTAAGCAC
TGGACAGTCATCCAGTGCATCAAGGTAGGGCGTCATTGTCCTTTTGTATATATGAATTGTACTTGTACAGTTGCCCACTT
TGATGCAATGCGTCCAAAGATGTTTTGAGGTCNCCNNNNNNNNNANNNNGCGCCACACAACAGTTGAAGAATCAGGTATG
TCTACATGGGAAGATGTTGAGGTAGAATGATGAGGATTGGAAGGCCGGAAGCACTTTGGGTCTGTAAATAGTTTAATGGA
AGTAGTGATGTGAAGCTGTGAGTGTTTTATCTTTGTGGCTTTGTCTGGGTCGCCAGACAAACCAGTGACCTTTGNGATGT
GCTGGATCTATTATTGGAGGACCGGGAAAATGCTGGTGGAAGTCTTACATTTGCTGAAATTGTCTTGGGGAGAAACTCAA
ATGAAGGCATTTTGGGCAGTTGGTATAGAAATGATTCTATTGGGCGTTTTCATACCGTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3740.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis