Browse Element(s) Details


OsAffx.29825.1.S1_x_at

Description tigr:9637.m01033
TID=OsAffx.29825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1305011/11hypothetical protein
LOC_Os08g015902/11expressed protein
LOC_Os11g017701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_x_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13020OsAffx.17678.1.S1_at11/119+7511402..7511710hypothetical protein
LOC_Os09g13030NANA9+7511888..7514754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13040OsAffx.17679.1.S1_at11/119+7517867..7521324hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_x_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.18628.1.S1_x_at1/119+7524310..7524849hypothetical protein
LOC_Os09g13060NANA9+7527906..7530974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13070Os.45173.1.S1_x_at2/119+7531372..7533451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13080OsAffx.29826.1.S1_at11/119+7535822..7537000hypothetical protein
LOC_Os09g13090NANA9+7539663..7541396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13100NANA9+7541880..7545546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13110Os.45902.1.A1_x_at5/119+7547366..7560707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13110Os.27088.1.A1_x_at4/119+7547366..7560707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13110Os.46012.2.S1_x_at4/119+7547366..7560707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13110Os.45976.1.S1_x_at3/119+7547366..7560707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13110Os.46012.3.S1_x_at2/119+7547366..7560707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13110Os.56372.1.S1_at1/119+7547366..7560707transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29825.1.S1_x_at--798--3652Chr12:455735..455958 (25 bp)
CTTCTTCAGGCCAGCGGCAGGAGGA
NONE
OsAffx.29825.1.S1_x_at--375--6171Chr09:7524568..7524592 (25 bp)
GAGGAGGCTGGCACAACTACGTCGC
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--433--4652Chr09:7524593..7524617 (25 bp)
GCGTCACCGATATGCGCGCGGCCTT
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--24--8651Chr09:7524643..7524667 (25 bp)
TGGGACAAGAGCCACATGTCCCCCT
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--348--9411Chr09:7524710..7524734 (25 bp)
TCGTGTTCGAGACCTCGCATCCCCA
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--1053--4971Chr09:7524726..7524750 (25 bp)
GCATCCCCAACCAATTGCTTACATA
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--22--551Chr09:7524728..7524752 (25 bp)
ATCCCCAACCAATTGCTTACATACG
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--221--9914Chr09:7524749..7524773 (25 bp)
TACGACTACTCCAAAATTCCCCAAT
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--56--3051Chr09:7524771..7524795 (25 bp)
AATCCCGAATCCGATGTCAAGCTCA
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--70--5251Chr09:7524777..7524801 (25 bp)
GAATCCGATGTCAAGCTCATCTCAT
LOC_Os09g13050
OsAffx.29825.1.S1_x_at--699--9594Chr09:7524793..7524817 (25 bp)
TCATCTCATCTCGTTTCGTTAGCTA
LOC_Os09g13050
Target Sequence 
CTTCTTCAGGCCAGCGGCAGGAGGAGAGACGATGGGCACGCGCGGATGCCGGCGGCGGGCGAGCGCCGCGGCGGAGCGTG
GCGACAGAGCAACGAAGCGGTGGCGGGCTGCGGGCGGAGCCGACGGCGGGCGAGCGCCGCGGCGGAGCATGGCGGCAGAG
CAGCGAAGCGGCGTCGGGCTACAGGCGGAGCGGACGGCGGCGAGGAGGCTGGCACAACTACGTCGCGCGTCACCGATATG
CGCGCGGCCTTCCCGTGGCAGACCTGGCACGAGGCGTGGGACAAGAGCCACATGTCCCCCTCGTCGACGGCGCTGAGGCA
GACCACGCACTCGACCGACGCCGTCGTGTTCGAGACCTCGCATCCCCAACCAATTGCTTACATACGACTACTCCAAAATT
CCCCAATCCCGAATCCGATGTCAAGCTCATCTCATCTCGTTTCGTTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29825.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis