Browse Element(s) Details


OsAffx.17678.1.S1_at

Description tigr:9637.m01030
TID=OsAffx.17678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1302011/11hypothetical protein
LOC_Os07g403601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12990OsAffx.29823.1.S1_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29823.1.S1_x_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29308.1.S1_x_at1/119+7493637..7494432hypothetical protein
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_x_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13020OsAffx.17678.1.S1_at11/119+7511402..7511710hypothetical protein
LOC_Os09g13030NANA9+7511888..7514754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13040OsAffx.17679.1.S1_at11/119+7517867..7521324hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_x_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.18628.1.S1_x_at1/119+7524310..7524849hypothetical protein
LOC_Os09g13060NANA9+7527906..7530974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13070Os.45173.1.S1_x_at2/119+7531372..7533451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13080OsAffx.29826.1.S1_at11/119+7535822..7537000hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17678.1.S1_at--1149--353Chr07:24200294..24200318 (25 bp)
ATAATGTTGACCATGCTGATGTTGA
LOC_Os07g40360
OsAffx.17678.1.S1_at--536--4732Chr09:7511647..7511671 (25 bp)
GCTGATGTTGACTCACTTGTCGTAG
LOC_Os09g13020
OsAffx.17678.1.S1_at--1109--5271Chr09:7511609..7511633 (25 bp)
GAATGTACAATACCGACCTGACGAT
LOC_Os09g13020
OsAffx.17678.1.S1_at--225--5831Chr09:7511595..7511619 (25 bp)
GACCTGACGATTTCACAAACTGGAG
LOC_Os09g13020
OsAffx.17678.1.S1_at--1046--8271Chr09:7511554..7511578 (25 bp)
GGCATTAGTGGTGATGCTACTGTAA
LOC_Os09g13020
OsAffx.17678.1.S1_at--761--9912Chr09:7511537..7511561 (25 bp)
TACTGTAATTGAGGAGGCGCGTGCT
LOC_Os09g13020
OsAffx.17678.1.S1_at--328--9112Chr09:7511516..7511540 (25 bp)
TGCTGCATCCATGCCTGAACCTGAT
LOC_Os09g13020
OsAffx.17678.1.S1_at--905--8933Chr07:24201457..24201480 (24 bp)
TGACGATGACATACCTGACGAAGAA
NONE
OsAffx.17678.1.S1_at--249--5371Chr09:7511470..7511494 (25 bp)
GAAGACGAATCCGATGACACCTACA
LOC_Os09g13020
OsAffx.17678.1.S1_at--971--5631Chr09:7511455..7511479 (25 bp)
GACACCTACATTGCTGATGGAGTTG
LOC_Os09g13020
OsAffx.17678.1.S1_at--419--8812Chr09:7511432..7511456 (25 bp)
TGTTGCTCCAGTCGAATCCCATGGA
LOC_Os09g13020
Target Sequence 
ATAATGTTGACCATGCTGATGTTGACTCACTTGTCGTAGGAGTGGATCAGATGAATGTACAATACCGACCTGACGATTTC
ACAAACTGGAGAAGATCTGACATTAAAGGCATTAGTGGTGATGCTACTGTAATTGAGGAGGCGCGTGCTGCATCCATGCC
TGAACCTGATGACGATGACATACCTGACGAAGAAGACGAATCCGATGACACCTACATTGCTGATGGAGTTGTTGCTCCAG
TCGAATCCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis